PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG010543.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 120aa    MW: 13373.7 Da    PI: 10.9357
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG010543.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.22.5e-12488184
                 EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEE.TTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE CS
           B3  1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltled.esgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkl 84
                 f k lt+ d ++  rl++p k +++    g      ++  ++d +sg++W++++ +rkks     l k+W++Fv++++L +gD ++F+ 
  CCG010543.1  4 FSKLLTKTDIGT--RLSVPTKSLKSLpcfGRG--HAIDFHVQDaQSGEVWNFRCVIRKKSHPkPALCKNWRKFVSSKRLSVGDKIIFST 88
                 556666666665..49*******999998544..4567899998999*******887777656999*********************94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.79E-13391IPR015300DNA-binding pseudobarrel domain
CDDcd100172.68E-16386No hitNo description
Gene3DG3DSA:2.40.330.103.7E-16392IPR015300DNA-binding pseudobarrel domain
PfamPF023621.4E-9590IPR003340B3 DNA binding domain
PROSITE profilePS508639.03740109IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    Send to blast
MAIFSKLLTK TDIGTRLSVP TKSLKSLPCF GRGHAIDFHV QDAQSGEVWN FRCVIRKKSH  60
PKPALCKNWR KFVSSKRLSV GDKIIFSTLA EGQASTGGAQ YKIEVKRQTK IFGVSLGYFP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011011302.18e-35PREDICTED: AP2/ERF and B3 domain-containing transcription repressor RAV2-like
RefseqXP_024442553.18e-35AP2/ERF and B3 domain-containing protein Os01g0693400-like
TrEMBLB9IBY27e-81B9IBY2_POPTR; Uncharacterized protein
STRINGPOPTR_0014s06340.11e-81(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2060778
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21550.13e-06VP1/ABI3-like 3