PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG010566.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family LBD
Protein Properties Length: 179aa    MW: 19382.1 Da    PI: 8.289
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG010566.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260125.92e-39121121100
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 
                  +C aCk+lr+kC+k+C++apyf  +q +++fa+vhk+FGasn +kll ++p ++r da+ +l+yeA ar+rdPvyG+vg+i++lqqq+ +l+aela +
  CCG010566.1  12 PCGACKFLRKKCVKGCIFAPYFDPDQgTAHFAAVHKVFGASNASKLLLRIPAHKRLDAVVTLCYEALARVRDPVYGCVGHIFTLQQQVLNLQAELAFI 109
                  7*********************777769*******************************************************************998 PP

       DUF260  98 kee 100
                  +++
  CCG010566.1 110 QAN 112
                  875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.02711113IPR004883Lateral organ boundaries, LOB
PfamPF031951.5E-3812110IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MMSAGTNNGS GPCGACKFLR KKCVKGCIFA PYFDPDQGTA HFAAVHKVFG ASNASKLLLR  60
IPAHKRLDAV VTLCYEALAR VRDPVYGCVG HIFTLQQQVL NLQAELAFIQ ANLSTLQRLP  120
QPQPPSQCAQ SPSQTTLDSS SEVPSFTKLA SSSNISTHFD QLQVQQTSTE MTGFYNPSD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-3931061104LOB family transfactor Ramosa2.1
5ly0_B4e-3931061104LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011034467.11e-131PREDICTED: LOB domain-containing protein 19
SwissprotO813225e-67LBD31_ARATH; LOB domain-containing protein 31
TrEMBLB9IC041e-128B9IC04_POPTR; Uncharacterized protein
STRINGPOPTR_0014s06580.11e-128(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17713493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00210.12e-60LOB domain-containing protein 31