PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG010616.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 306aa    MW: 33415.1 Da    PI: 8.3974
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG010616.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.73.8e-202878256
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                 ++ GVr+++ +grWvAeI+d s   +r r +lg+++t+eeAa+a+++a+++l+ge
  CCG010616.1 28 RFVGVRQRP-SGRWVAEIKDSS---QRVRLWLGTYDTPEEAARAYDEAARALRGE 78
                 589******.7*********43...36**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.5342885IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-282886IPR001471AP2/ERF domain
CDDcd000185.03E-322885No hitNo description
SMARTSM003805.8E-362891IPR001471AP2/ERF domain
PfamPF008473.8E-152878IPR001471AP2/ERF domain
PRINTSPR003673.1E-72940IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-202985IPR016177DNA-binding domain
PRINTSPR003673.1E-75167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MAEPETLRNS PTVTTTKVQA TKGPTVRRFV GVRQRPSGRW VAEIKDSSQR VRLWLGTYDT  60
PEEAARAYDE AARALRGENA RTNFASVNPN LNQYGSSPSS NGGLKMSESD GRHGLSFSSL  120
KAKLSKNLQS IMARTTENKA TKNRVSDHFT FANIFHFRSH QYQNPVDMKS IEKVVQPSII  180
VPHVSDHKPS YSWETSCVSD CSNEWIGFRQ YGFDSDGSDI GEVLSTVNAD QMIGWVESPD  240
INTCCGDPCS RSKRLKVSSS VVVPPTFSGS PSFCASPSFS GSPSFCASPS FSGSPSFCGS  300
PFHGEN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-1428841471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011035387.10.0PREDICTED: uncharacterized protein LOC105133206
TrEMBLA0A2C9VT611e-143A0A2C9VT61_MANES; Uncharacterized protein
STRINGPOPTR_0014s07280.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83243143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.12e-17related to AP2 11