PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG010638.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 541aa    MW: 60931.1 Da    PI: 8.5172
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG010638.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.12.1e-184993348
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +WT eEd++l+davk++ +++Wk+Ia++++  Rt+ qc +rwqk+l
      CCG010638.1 49 KWTGEEDKILADAVKRYNSKNWKKIAECVP-DRTDVQCLHRWQKVL 93
                     8*****************************.************986 PP
2Myb_DNA-binding591.1e-1899145148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+W +eEd+l+ ++v+ +G++ W+ Ia++++ gR +kqc++rw+++l
      CCG010638.1  99 KGPWKKEEDDLIRELVEIHGNKKWSQIAKHLP-GRIGKQCRERWHNHL 145
                      79******************************.*************97 PP
3Myb_DNA-binding51.52.3e-16151193145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      r +WT+eE+  l++a++ +G++ W+ Ia+ +  gRt++++k++w+
      CCG010638.1 151 RTPWTKEEEAVLIKAHEAYGNK-WAEIAKLLH-GRTENSIKNHWN 193
                      789*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.7474293IPR017930Myb domain
SMARTSM007171.4E-154695IPR001005SANT/Myb domain
SuperFamilySSF466891.79E-1748109IPR009057Homeodomain-like
PfamPF002492.4E-164993IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.6E-2349110IPR009057Homeodomain-like
CDDcd001671.33E-134993No hitNo description
PROSITE profilePS5129432.15394149IPR017930Myb domain
SuperFamilySSF466891.51E-3096192IPR009057Homeodomain-like
SMARTSM007177.7E-1898147IPR001005SANT/Myb domain
CDDcd001677.19E-15101145No hitNo description
PfamPF139213.3E-18102159No hitNo description
Gene3DG3DSA:1.10.10.603.3E-28111153IPR009057Homeodomain-like
SMARTSM007175.2E-16150198IPR001005SANT/Myb domain
PROSITE profilePS5129420.187150200IPR017930Myb domain
CDDcd001672.13E-11153193No hitNo description
Gene3DG3DSA:1.10.10.601.2E-22154200IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
MVEEVEEINS NSKTKGLVYW TGLVPHGGIR NAIPNQQGRM TGPTRRSRKW TGEEDKILAD  60
AVKRYNSKNW KKIAECVPDR TDVQCLHRWQ KVLDPKLVKG PWKKEEDDLI RELVEIHGNK  120
KWSQIAKHLP GRIGKQCRER WHNHLNPDIN RTPWTKEEEA VLIKAHEAYG NKWAEIAKLL  180
HGRTENSIKN HWNCSVRKRI ESYPALGLDF YSYKTKADGK KLEVGKQRND RGVNLCSNVE  240
PCSLDLVLGN VGRREDQLTV SDNEICKEWN DSAKSTGRTI GTKATDTCGL SSQDCRESAS  300
SAYTSESTDH SSVNQPGKIC DISFGNLMRS PYSQERTHET TNTINSLHSE ALSPSLDLSL  360
STPFSAHGYD ETWDEHEKNR GAGGPNTTDK LHRGLCFESL QQKDLNVFLE TGSFPSSDCY  420
IRTVGGPGSF STPISRNRVS PNCSSPESRL RSKARSFKSM PSIIRKRSSI TLRQAGSSDK  480
GDYGLRSLGS CSSDKDDDDD DVDLLNKKQL FLSPPKSKKL ETLEDMKSVE KRLEYAFNIE  540
G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C5e-62492008159MYB PROTO-ONCOGENE PROTEIN
1h89_C5e-62492008159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011035654.10.0PREDICTED: uncharacterized protein LOC105133380
TrEMBLA0A2K1XS630.0A0A2K1XS63_POPTR; Uncharacterized protein
STRINGPOPTR_0014s07520.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF149761314
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.14e-82Homeodomain-like protein