PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG010761.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 297aa    MW: 33894.8 Da    PI: 5.2968
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG010761.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.21.3e-20100150155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                  ++y+GVr+++ +grW+AeIrdp     +  +r++lg+++taeeAa  +++a+ +++g
  CCG010761.1 100 KKYRGVRQRP-WGRWAAEIRDP-----HrrTRVWLGTYDTAEEAAMVYDQAAIRIKG 150
                  59********.**********6.....226***********************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.90E-32100157No hitNo description
SMARTSM003808.1E-39101164IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-31101158IPR001471AP2/ERF domain
PfamPF008471.8E-14101150IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-22101158IPR016177DNA-binding domain
PROSITE profilePS5103223.749101158IPR001471AP2/ERF domain
PRINTSPR003675.1E-11102113IPR001471AP2/ERF domain
PRINTSPR003675.1E-11124140IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MDRFSTKYTE HKTVTNKLVR WEDPKATRIV RISVTDGNAT DSSGDENEEP KIQHPRIKKH  60
INEIRMTDCS AREAEAAKKS PGQQVVKKNS RDQYYYPEGK KYRGVRQRPW GRWAAEIRDP  120
HRRTRVWLGT YDTAEEAAMV YDQAAIRIKG PDAQTNFTKP PVSKQHAPDV DINVNISGYD  180
SGKESHNSLC SPTSVLRFHS TGEPGPESQA AVQSDCCWRQ NQEVVQEEIL KGGDDECLVM  240
DPLCLKEFWD FESPAPIFFE ECSVPGTVLR EDYADMPVHL DCDFGSCLWD VDKYFEA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-2198157262ATERF1
3gcc_A9e-2198157262ATERF1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2080940.0AC208094.1 Populus trichocarpa clone JGIACSB09-L10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011037631.10.0PREDICTED: ethylene-responsive transcription factor CRF5-like
TrEMBLB9I8U10.0B9I8U1_POPTR; ERF family protein
STRINGPOPTR_0014s09020.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46310.13e-51cytokinin response factor 5