PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG010877.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 402aa    MW: 45705.1 Da    PI: 7.8889
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG010877.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3100.87.8e-32109213199
                  EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE.. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefel 92 
                  f+kv tpsdv+k++rlv+pk++ae++    ++++e++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g+  + +l
  CCG010877.1 109 FDKVVTPSDVGKLNRLVIPKQHAERYfpldSSSNEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDIVSFQRGvGEsGKHRL 206
                  89****************************66677899*************************************************66577788889 PP

                  EEEEE-S CS
           B3  93 vvkvfrk 99 
                  ++ ++r+
  CCG010877.1 207 FIDWRRR 213
                  9999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.6E-43101216IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.62E-30106214IPR015300DNA-binding pseudobarrel domain
CDDcd100172.47E-26107208No hitNo description
PfamPF023622.4E-29109213IPR003340B3 DNA binding domain
SMARTSM010192.3E-22109214IPR003340B3 DNA binding domain
PROSITE profilePS5086314.79109214IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MNFVGGERGY FDREEQEEEE AMSSKLPFAS PCTSSSSSKY KNFLPEHQNL WPRLFDQPRQ  60
DSKTQEPSLN FDKKLEFMEL SLGNNNESES SSTDAGGGAT ESIEREHMFD KVVTPSDVGK  120
LNRLVIPKQH AERYFPLDSS SNEKGLLLNF EDRNGKPWRF RYSYWNSSQS YVMTKGWSRF  180
VKEKRLDAGD IVSFQRGVGE SGKHRLFIDW RRRPNAPDPT PFSHLELQNQ LHYPQSLRWG  240
RLYSMPQSNL PMQQPQLQHL NYSIHPYQHH NHQYPYHQPS TISYGNAAQY YLRPPAVTFP  300
IGAVHEQGGS HVPVVLDSVP VVHGKTGGKR LRLFGVNMEC PTQNDPSSSV TMIRHGTLDS  360
LSPHLASSSL PPPLQVREPT GAPMQAEFSK KGKASLSFDL DL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A4e-671042163116B3 domain-containing transcription factor NGA1
5os9_B4e-671042163116B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011039544.10.0PREDICTED: B3 domain-containing transcription factor NGA1-like isoform X1
RefseqXP_011039552.10.0PREDICTED: B3 domain-containing transcription factor NGA1-like isoform X1
SwissprotO827993e-88NGA1_ARATH; B3 domain-containing transcription factor NGA1
TrEMBLU5GT980.0U5GT98_POPTR; Uncharacterized protein
STRINGPOPTR_0014s10290.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23383382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.11e-78B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Lee BH, et al.
    The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs.
    Plant Mol. Biol., 2015. 89(4-5): p. 529-38
    [PMID:26433582]
  3. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]
  4. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]
  5. Sasnauskas G,Manakova E,Lapėnas K,Kauneckaitė K,Siksnys V
    DNA recognition by Arabidopsis transcription factors ABI3 and NGA1.
    FEBS J., 2018. 285(21): p. 4041-4059
    [PMID:30183137]
  6. Sato H, et al.
    Arabidopsis thaliana NGATHA1 transcription factor induces ABA biosynthesis by activating NCED3 gene during dehydration stress.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(47): p. E11178-E11187
    [PMID:30397148]