PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG010949.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 287aa    MW: 32885.6 Da    PI: 6.7884
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG010949.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.71.1e-172269148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd ll+++++ +G g+W+t ar+ g++Rt+k+c++rw++yl
      CCG010949.1 22 KGPWTVEEDSLLAHYITNHGEGHWNTAARCAGLKRTGKSCRLRWLNYL 69
                     79********************************************97 PP
2Myb_DNA-binding46.58.8e-1575118146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T +E++l+++++  +G++ W++Ia+ ++ gRt++++k++w++
      CCG010949.1  75 RGNITLQEQLLILQLHSHWGNR-WSKIAQQLP-GRTDNEIKNYWRT 118
                      7899******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.1691769IPR017930Myb domain
SuperFamilySSF466894.03E-2919116IPR009057Homeodomain-like
SMARTSM007175.7E-122171IPR001005SANT/Myb domain
PfamPF002492.2E-142269IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.2E-212376IPR009057Homeodomain-like
CDDcd001672.81E-92469No hitNo description
PROSITE profilePS5129423.30970124IPR017930Myb domain
SMARTSM007173.9E-1374122IPR001005SANT/Myb domain
PfamPF002491.4E-1375118IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-2177123IPR009057Homeodomain-like
CDDcd001671.36E-695118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MDARLRKHGL ASTEDQDMGT RKGPWTVEED SLLAHYITNH GEGHWNTAAR CAGLKRTGKS  60
CRLRWLNYLR PNVRRGNITL QEQLLILQLH SHWGNRWSKI AQQLPGRTDN EIKNYWRTRV  120
QKQAKQLKCD VNSKQFRDTM RYAWIPRLIE RIHAESESPV DQPIISTPTY HSSQIDIPAA  180
ASESGSDLIG PNFMPDISGS CTYSDSLDAQ VSSGSDLTNS QNPPCSHYMQ NGACSYPEND  240
SLSWDWDQHR VDMQGMERGR YDLTGGGDSM ENLWSEENIW FLHHQLM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-22221247108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011040784.10.0PREDICTED: transcription factor MYB108-like
TrEMBLB9I9F30.0B9I9F3_POPTR; Uncharacterized protein
STRINGPOPTR_0014s11230.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87534125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.14e-76myb domain protein 78