PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG010959.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 319aa    MW: 35880 Da    PI: 7.0179
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG010959.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY108.53.2e-34159216259
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  +Dgy+WrKYGqK vk+s+fprsYYrCt+a+C+vkk+vers +dp+vv++tYeg+H+h+
  CCG010959.1 159 EDGYRWRKYGQKAVKNSPFPRSYYRCTTASCNVKKRVERSFSDPSVVVTTYEGQHTHP 216
                  8********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381301.4E-1071319IPR017396PWRKY transcription factor, group IIc
Gene3DG3DSA:2.20.25.808.3E-35143218IPR003657WRKY domain
SuperFamilySSF1182901.57E-29150218IPR003657WRKY domain
PROSITE profilePS5081131.961153218IPR003657WRKY domain
SMARTSM007741.3E-40158217IPR003657WRKY domain
PfamPF031069.3E-27159216IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MERREAVKVE KFDGSPAFSA TNDHVQTSYP FMQGHYGFDF VDGDKNALGF MELLGMQDFS  60
PSLLDMIQVP IPPAQDPNVH VVTESPPELL NQPATPNSSS ISSASSEGLN DEPVNKSVDD  120
EVEEQEKNKK ELKPKKTNQK RQREPRFAFM TKSEVDHLED GYRWRKYGQK AVKNSPFPRS  180
YYRCTTASCN VKKRVERSFS DPSVVVTTYE GQHTHPSPVM PRPSFTGPAS DSGFSSTAAF  240
VMPMQRRLSF YQQHQSRQQP PFVNSFSPLG FGYNGSTTNA AAINYLQYEK RFCSSSGSTL  300
LKDHGLLQDL VPSHMLKEE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-28148219778Probable WRKY transcription factor 4
2lex_A3e-28148219778Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3774330.0GQ377433.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor 13 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011040950.10.0PREDICTED: probable WRKY transcription factor 23
SwissprotO229008e-69WRK23_ARATH; WRKY transcription factor 23
TrEMBLA0A1L6K5G10.0A0A1L6K5G1_POPTO; WRKY transcription factor
STRINGPOPTR_0014s11350.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100234114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47260.13e-62WRKY DNA-binding protein 23
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Guo D,Qin G
    EXB1/WRKY71 transcription factor regulates both shoot branching and responses to abiotic stresses.
    Plant Signal Behav, 2016. 11(3): p. e1150404
    [PMID:26914912]
  4. Prát T, et al.
    WRKY23 is a component of the transcriptional network mediating auxin feedback on PIN polarity.
    PLoS Genet., 2018. 14(1): p. e1007177
    [PMID:29377885]