PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG010972.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

WRKY

Protein Properties

Length: 242aa MW: 27921 Da PI: 5.572

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG010972.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	95.4	4.1e-30	52	110	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+++ gC++kk+ver+++d +v+++tY+++Hnh+ CCG010972.1 52 SDFWSWRKYGQKPIKGSPYPRGYYRCSTSkGCSAKKQVERCRTDASVLIVTYTSNHNHP 110 699*********************9988**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	8.6E-32	43	112	IPR003657	WRKY domain
SuperFamily	SSF118290	5.89E-26	48	112	IPR003657	WRKY domain
SMART	SM00774	2.0E-35	51	111	IPR003657	WRKY domain
PROSITE profile	PS50811	31.169	52	112	IPR003657	WRKY domain
Pfam	PF03106	4.2E-25	53	110	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence Send to blast
MDSSPSRKLD SNVSELTPET QTSKRRKMVE KIVVRVRIGE NARKLKNEGP PSDFWSWRKY 60 GQKPIKGSPY PRGYYRCSTS KGCSAKKQVE RCRTDASVLI VTYTSNHNHP GPDLHDSNVN 120 QQPRDPETPP TDLVDHPITP KQEKPEEETG ERHDHPIMPS TDEDVSEGHN FHYLESPIRI 180 PQDIMISQDY PFTENSEKSH DIVFDEEPIC CSRLMTFSAP KTEENNDFFD ELEELPHIFV 240 FH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	1e-20	52	112	17	79	Disease resistance protein RRS1
5w3x_D	1e-20	52	112	17	79	Disease resistance protein RRS1
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	24	45	RRKMVEKIVVRVRIGENARKLK

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GQ377423	0.0	GQ377423.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor 3 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011041119.1	0.0	PREDICTED: probable WRKY transcription factor 69 isoform X1
TrEMBL	B9I9I2	1e-170	B9I9I2_POPTR; Uncharacterized protein
STRING	POPTR_0014s11490.1	1e-171	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9708	32	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58710.2	6e-36	WRKY DNA-binding protein 69