PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG011022.2
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GATA
Protein Properties Length: 365aa    MW: 40897.2 Da    PI: 9.7777
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG011022.2genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA50.82.3e-161650135
         GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                 C  C+tt Tp+WR gp g++tLCnaCG+++rkk++
  CCG011022.2 16 CMDCQTTRTPCWRGGPAGPRTLCNACGIRQRKKRR 50
                 999*****************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.3E-121067IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.09E-121050No hitNo description
PROSITE profilePS5011411.6481046IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.106.2E-131350IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.16E-121566No hitNo description
PfamPF003205.7E-141650IPR000679Zinc finger, GATA-type
PROSITE patternPS0034401641IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MDNTQSSKGN EIKRRCMDCQ TTRTPCWRGG PAGPRTLCNA CGIRQRKKRR ALLGSDKGGA  60
ERSKNKIAKS SNSSKLGVSL KLDLMGFRRD GILQEDWKRK LGEEEQAAIL LMALSCGLGA  120
NLNMIQSRLA ATATRSYRSL YLANNLARVR GFATEPTGRP ADPEVYADRE HEIQHALPTG  180
KPEEMAGKYE PGTGKRQTEA EYRLSKDTEP LAPPKPPHVP TTRLENAGVH NRAEPIVQQR  240
RKNSTLTLEE VSRAGLDGAP WPKDERSTKE LVEDDKEYFR RRKASPLSET QVADTRKPIT  300
RATDGTACEE IYKEPGGVIG WLPEQIDTAE QALERARRIW MENAMRGDPD TPHGRVLREL  360
RGEWF
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2286530.0CU228653.1 Populus EST from severe drought-stressed leaves.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011041717.11e-177PREDICTED: uncharacterized protein LOC105137610
RefseqXP_011041728.11e-177PREDICTED: uncharacterized protein LOC105137610
TrEMBLB9I9M61e-163B9I9M6_POPTR; Uncharacterized protein
STRINGPOPTR_0014s11950.11e-164(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1271222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.16e-26GATA transcription factor 16