PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG011036.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 309aa    MW: 35032.9 Da    PI: 5.7755
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG011036.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.5e-1977125355
          AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a+++ ++k++g
  CCG011036.1  77 YRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDREARKIRG 125
                  9*******.**********954...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.48E-2276134IPR016177DNA-binding domain
PROSITE profilePS5103223.77576133IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-3276134IPR001471AP2/ERF domain
SMARTSM003803.1E-3876139IPR001471AP2/ERF domain
PRINTSPR003678.0E-127788IPR001471AP2/ERF domain
CDDcd000183.79E-3377134No hitNo description
PfamPF008476.3E-1277125IPR001471AP2/ERF domain
PRINTSPR003678.0E-1299115IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MCGGAILAGL IPRNRGQRVA ASEFWPNSCF NKPSPFDSYP SPLRNQEPFT LKRPQAPSGD  60
HEQVEKPNAK RQRKNLYRGI RQRPWGKWAA EIRDPRKGVR VWLGTFNTAE EAARAYDREA  120
RKIRGKKAKV NFPNEDDHYH TSQNSNTKPF LYQAPTCHFS KGYDSGNVYD AYQIETYHSN  180
GLINEPIVTS GEDDSRSGSE EVAGLWGCNQ NVESNTYMSQ VKVEEEKLEK KVMKKEVVMV  240
DLENGEEESE VQKLTEELMA YENFMKFYQI PYVDGQSTTP NGTTQESLVG NLWSFFDDGV  300
DAPVASAPL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-2277133360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A2e-21771351574Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ5449153e-58FJ544915.1 Citrus unshiu putative ethylene responsive element binding protein 2 (EREBP2) mRNA, complete cds.
GenBankFJ5449163e-58FJ544916.1 Citrus unshiu putative ethylene responsive element binding protein 3 (EREBP3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011041915.10.0PREDICTED: ethylene-responsive transcription factor ERF071-like
TrEMBLB9I9P10.0B9I9P1_POPTR; Uncharacterized protein
STRINGPOPTR_0014s12090.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67713449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.14e-34ethylene-responsive element binding protein