PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG011093.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

Dof

Protein Properties

Length: 326aa MW: 34715.7 Da PI: 9.0199

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG011093.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121.8	2.3e-38	71	130	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 e+alkcprC+stntkfCy+nnysl+qPr+fCk+CrryWt+GGalr vPvGgg+r+nk+s+ CCG011093.1 71 EAALKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRSVPVGGGCRRNKRSK 130 6789*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-34	54	123	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.3E-32	73	128	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.227	74	128	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	76	112	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MDFSSIPAYL DPANWQQQPN HQTGVSSSTA TQLLPPPPPP PPQPHGSGGA GSIRPGSMAD 60 RARMANIPLP EAALKCPRCE STNTKFCYFN NYSLTQPRHF CKTCRRYWTR GGALRSVPVG 120 GGCRRNKRSK ESSSKSPISG YRQTGSCSSS TVSSNSGTSD TFGLGPQVPP MRFMAPLHHH 180 TEFASGNIGL NYGALSKTLV GGASDLNFQM GSNLASAGLG GNVGAGGSLL SMGGFDQWRM 240 QQGQQLPFFG GLDSSASGLY PFEGGAEPSG YGGGADHIRP KISSSTATPL ASVKMEENQE 300 LNMSRQFLGI PGNDQYPEWY FMDRSF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Probably involved in early processes for vascular development (PubMed:17583520). The PEAR proteins (e.g. DOF2.4, DOF5.1, DOF3.2, DOF1.1, DOF5.6 and DOF5.3) activate gene expression that promotes radial growth of protophloem sieve elements. Triggers the transcription of HD-ZIP III genes, especially in the central domain of vascular tissue (PubMed:30626969). {ECO:0000250\|UniProtKB:Q9M2U1, ECO:0000269\|PubMed:17583520, ECO:0000269\|PubMed:30626969}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00295	DAP	Transfer from AT2G37590	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cytokinin in procambium. Antagonized by the HD-ZIP III proteins and by mobile miR165 and miR166 microRNAs. {ECO:0000269\|PubMed:30626969}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011019882.1	0.0	PREDICTED: dof zinc finger protein DOF2.4
Swissprot	O80928	1e-58	DOF24_ARATH; Dof zinc finger protein DOF2.4
TrEMBL	B9HBK6	0.0	B9HBK6_POPTR; Uncharacterized protein
STRING	POPTR_0006s08440.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF656	34	143

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37590.1	2e-48	DNA binding with one finger 2.4

Publications ? help Back to Top
Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] Miyashima S, et al. Mobile PEAR transcription factors integrate positional cues to prime cambial growth. Nature, 2019. 565(7740): p. 490-494 [PMID:30626969]