PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG011120.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 84aa    MW: 9447.85 Da    PI: 9.7906
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG011120.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP244.92.8e-142451056
          AP2 10 kkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56
                 +++g+Wv+eIr+p+    + +r++lg+++ +e+Aa+a++a   +++ge
  CCG011120.1  2 RTWGKWVSEIRVPK----TgQRIWLGSYDAPEKAARACDAIQYCIRGE 45
                 46**********95....35************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003804.6E-17158IPR001471AP2/ERF domain
CDDcd000186.94E-19153No hitNo description
PROSITE profilePS5103215.672152IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-20153IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-15253IPR016177DNA-binding domain
PfamPF008476.2E-8245IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 84 aa     Download sequence    Send to blast
MRTWGKWVSE IRVPKTGQRI WLGSYDAPEK AARACDAIQY CIRGECGQFN FPAERRPQLP  60
SGPVDALFKK EIKAIAFNFA SSNA
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00463DAPTransfer from AT4G31060Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011020355.17e-57PREDICTED: ethylene-responsive transcription factor ERF015-like
SwissprotQ6NLD52e-36ERF15_ARATH; Ethylene-responsive transcription factor ERF015
TrEMBLB9HBC81e-46B9HBC8_POPTR; ERF family protein
STRINGPOPTR_0006s08000.12e-47(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF154791011
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31060.18e-39ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]