PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG011194.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family HD-ZIP
Protein Properties Length: 220aa    MW: 25437.4 Da    PI: 8.4809
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG011194.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.82.1e-1989143256
                  T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  rk+ ++tk+q   Lee F+++++++ +++  +A++l+L+ rqV vWFqNrRa+ k
  CCG011194.1  89 RKKLRLTKDQSSYLEESFRRHPTLNPAKKHAIAEQLNLKPRQVEVWFQNRRARTK 143
                  678899***********************************************98 PP
2HD-ZIP_I/II120.96.7e-3989178190
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                  +kk+rl+k+q++ LEesF+++ +L+p +K+++a++L+l+prqv+vWFqnrRARtk+kq+E d+e Lk+++++l++en+rL++e +eLr++
  CCG011194.1  89 RKKLRLTKDQSSYLEESFRRHPTLNPAKKHAIAEQLNLKPRQVEVWFQNRRARTKLKQTEADCELLKKCCESLSNENRRLKRELQELRSQ 178
                  69*************************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.13E-1975146IPR009057Homeodomain-like
PROSITE profilePS5007116.79585145IPR001356Homeobox domain
SMARTSM003892.7E-1687149IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.5E-1889143IPR009057Homeodomain-like
CDDcd000861.20E-1489146No hitNo description
PfamPF000461.1E-1689143IPR001356Homeobox domain
PROSITE patternPS000270120143IPR017970Homeobox, conserved site
SMARTSM003401.1E-17145188IPR003106Leucine zipper, homeobox-associated
PfamPF021837.5E-9145179IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MEEEGYCNTR LGLGLGGENY VPWPQKQKEK PVVRLDLSFT LWPDQEDSRN IDRHDKAEGT  60
CFKSEEDEDY GNKRSDHSID NSCMYGTGRK KLRLTKDQSS YLEESFRRHP TLNPAKKHAI  120
AEQLNLKPRQ VEVWFQNRRA RTKLKQTEAD CELLKKCCES LSNENRRLKR ELQELRSQKT  180
GRSSSSSSSH SQLAKDIGTI TKCPSCEEST TTDQKICSRF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1137145RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011020097.11e-163PREDICTED: homeobox-leucine zipper protein HAT14-like
SwissprotA2XE764e-47HOX19_ORYSI; Homeobox-leucine zipper protein HOX19
SwissprotP466654e-47HAT14_ARATH; Homeobox-leucine zipper protein HAT14
SwissprotQ8GRL44e-47HOX19_ORYSJ; Homeobox-leucine zipper protein HOX19
TrEMBLB9HAM61e-146B9HAM6_POPTR; Uncharacterized protein
STRINGPOPTR_0006s07100.11e-147(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56642851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.15e-48homeobox from Arabidopsis thaliana