PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG011223.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

YABBY

Protein Properties

Length: 188aa MW: 21149.9 Da PI: 8.6171

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG011223.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	200.6	6.3e-62	9	161	6	170
YABBY 6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklse 103 eq+ y+ CnfCn +lavsvP +slf +vtvrCGhC+++ svn+a + q l+ +++++ ++++++ ++ +++ +++ sv + CCG011223.1 9 PNEQLRYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCSNIWSVNMAATFQSLPWQDQVQA-------SNHNSHDYRIDLGSSSKFNNKISV-----RT 94 5799*************************************************98332.......333333333333333332222222.....33 PP YABBY 104 nedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 + v++ v+rPPekrqrvPsayn+fikeeiqrika+nPdishreafs+aaknWahfP+ihfgl CCG011223.1 95 PAANIVTQERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 161 3344445555689**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.1E-69	9	161	IPR006780	YABBY protein
SuperFamily	SSF47095	5.11E-8	106	154	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	1.4E-4	109	155	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 188 aa Download sequence Send to blast
MSSCIDAVPN EQLRYIPCNF CNIVLAVSVP CSSLFDIVTV RCGHCSNIWS VNMAATFQSL 60 PWQDQVQASN HNSHDYRIDL GSSSKFNNKI SVRTPAANIV TQERVVNRPP EKRQRVPSAY 120 NQFIKEEIQR IKANNPDISH REAFSTAAKN WAHFPHIHFG LMLGTNSQTK VDDGSEKHLM 180 SRSALPNN

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ667744	3e-60	KJ667744.1 Solanum sisymbriifolium YAB5 protein mRNA, complete cds.
GenBank	KJ667746	3e-60	KJ667746.1 Solanum virginianum YAB5 protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011020144.1	1e-139	PREDICTED: axial regulator YABBY 5-like
Swissprot	Q8GW46	2e-80	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	B9HAJ0	1e-128	B9HAJ0_POPTR; Uncharacterized protein
STRING	POPTR_0006s06700.1	1e-129	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1124	34	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	7e-83	YABBY family protein

Publications ? help Back to Top
Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]