PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG011237.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 232aa    MW: 26917.3 Da    PI: 8.6599
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG011237.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.31.3e-161259148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W +eEd++l+ +v+ +G g+W++++++ g+ R++k+c++rw +yl
      CCG011237.1 12 KGLWKPEEDLILKTYVETHGEGNWSAVSKRSGLMRCGKSCRLRWKNYL 59
                     678*******************************************97 PP
2Myb_DNA-binding48.91.6e-1565110148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg ++++E++ +++ +k+lG++ W++Ia +++ gRt++++k++w+++l
      CCG011237.1  65 RGGMSQDEEDMIIRMHKLLGNR-WTLIAGRLP-GRTDNDVKNYWNTHL 110
                      67799*****************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-22662IPR009057Homeodomain-like
PROSITE profilePS5129424.95763IPR017930Myb domain
SuperFamilySSF466891.09E-289106IPR009057Homeodomain-like
SMARTSM007171.0E-131161IPR001005SANT/Myb domain
PfamPF002492.1E-151259IPR001005SANT/Myb domain
CDDcd001676.85E-111559No hitNo description
Gene3DG3DSA:1.10.10.609.9E-2263113IPR009057Homeodomain-like
PROSITE profilePS5129418.2864114IPR017930Myb domain
SMARTSM007171.7E-1464112IPR001005SANT/Myb domain
PfamPF002496.4E-1465110IPR001005SANT/Myb domain
CDDcd001671.05E-1068110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MESKGAKPEF KKGLWKPEED LILKTYVETH GEGNWSAVSK RSGLMRCGKS CRLRWKNYLR  60
PNIIRGGMSQ DEEDMIIRMH KLLGNRWTLI AGRLPGRTDN DVKNYWNTHL NKRCPIRKRK  120
TIDSKPDQND NNTKKQYRSK RIRSLSNSQP TCNTSPIGST EELEGKNQEK EERSAVISDA  180
WIQQDAQSMN SCIESPMVFH NNAAFFFEDE PFLTYCDSFD MFESLGCGSD YW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-23811423128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activation factor positively regulating trichomes development (PubMed:24803498). Has a function nearly equivalent to that of GL1 and can complement gl1 mutants (PubMed:24803498). {ECO:0000269|PubMed:24803498}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin (IAA). {ECO:0000269|PubMed:9839469}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011020166.11e-175PREDICTED: transcription factor MYB82-like
SwissprotQ9LTF71e-59MYB82_ARATH; Transcription factor MYB82
TrEMBLB9HA931e-164B9HA93_POPTR; Uncharacterized protein
STRINGPOPTR_0006s06530.11e-165(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF135452026
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52600.15e-62myb domain protein 82