PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG011338.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 285aa    MW: 32335 Da    PI: 6.053
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG011338.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.64e-202878155
          AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 ++y+GVr++  +g+WvAeIr+p++   r+r +lg+f taeeAa a+++a+++l+g
  CCG011338.1 28 CDYRGVRQRT-WGKWVAEIREPKK---RARLWLGSFATAEEAAMAYDEAARRLYG 78
                 68*****999.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.95E-322888No hitNo description
PfamPF008471.0E-132878IPR001471AP2/ERF domain
SMARTSM003803.4E-382992IPR001471AP2/ERF domain
PROSITE profilePS5103222.5372986IPR001471AP2/ERF domain
PRINTSPR003673.4E-103041IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-303087IPR001471AP2/ERF domain
SuperFamilySSF541713.86E-213087IPR016177DNA-binding domain
PRINTSPR003673.4E-105268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MENCGKYPLK PWKKGPTRGK GGPQNAMCDY RGVRQRTWGK WVAEIREPKK RARLWLGSFA  60
TAEEAAMAYD EAARRLYGPS AYLNLPHLQS NSSPPNKSQK FKWIPSNNFI STFPSCGLLN  120
IHAQPSVHVI HQRLQELKNN RPINQSSVAS SSSSSESRTE VIVGDENHVA NVSAAEKDEE  180
ISSEKMPLTN RDEKPQIDLN EFLQQLGILK EKNQPDNNDV DEHFMDPESS QKDQNELTVL  240
AEKSFDWDSL IEMHGIADHH GEESNSFPVY DIQKELAFPT SIWNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-193086360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00411DAPTransfer from AT3G57600Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1826860.0AC182686.2 Populus trichocarpa clone Pop1-37M17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011020328.10.0PREDICTED: dehydration-responsive element-binding protein 2F
SwissprotQ9SVX59e-91DRE2F_ARATH; Dehydration-responsive element-binding protein 2F
TrEMBLA0A2K1ZXA50.0A0A2K1ZXA5_POPTR; Uncharacterized protein
STRINGPOPTR_0006s05320.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54773150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57600.16e-80ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]