PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG011339.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB_related
Protein Properties Length: 583aa    MW: 65445.6 Da    PI: 5.0142
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG011339.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.61.2e-07524575347
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmg....kgRtlkqcksrwqky 47 
                      +WT +E+e l+++v+++ ++    Wk I ++       gRt  ++k++w++ 
      CCG011339.1 524 PWTVQEEEMLKEGVQKFSSDgkfPWKDILEYGCsvflSGRTTIDLKDKWRNM 575
                      7*****************************99999999************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.48517576IPR017877Myb-like domain
SuperFamilySSF466899.72E-12519577IPR009057Homeodomain-like
SMARTSM007174.3E-4521578IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-11521577IPR009057Homeodomain-like
PfamPF002491.6E-5524574IPR001005SANT/Myb domain
CDDcd116601.27E-15524577No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 583 aa     Download sequence    Send to blast
MLKKQAWMAD PSISATTLAW HWVIEYLASF PEIEASILQD LIEAAPKIPE DLRKNTREMV  60
ALRCLEDFFC HNNGSTNDFP SKEAKVTFDL SESCEDVLQS ILQETSVSDL KRAGPERLKW  120
DTRPFIMHKR ASMPKCALEK VKGAILEGIH PYASLKEYSG LVDANDWCNR ISANYGDLGA  180
PAGRIDGQIN APEENSIPLR GIEVEGDSCN RTSLHLKRDR SGSANENLAG DLEDQICVDD  240
GDHLHPQAKR FKQDAICGYQ SLEHISTPQQ HMEMVEDSIQ RVTGDSENKD CHMEKRTSQG  300
GLEESRSVGN GHDECVGMDR HGKSLDPDNA FQHNQHEIAH NANKMSQDIS GDALHLYSLV  360
DEINCAEPRI SNTAPSVGTP NKFFVNENND NSDHSGQLKP SNSLCHPDST VRTNHIYNGE  420
KVGEEMVREN PSGTGLDRNQ HEVCVDPIDS DVDQSCKEKD VFSGIQSRDG QRQKAVSATN  480
IDGGETSDDE NDKSSSSNYF IQFRNIEKQY SYPVMPQLRR KKFPWTVQEE EMLKEGVQKF  540
SSDGKFPWKD ILEYGCSVFL SGRTTIDLKD KWRNMCKASP KFK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1826860.0AC182686.2 Populus trichocarpa clone Pop1-37M17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011020332.10.0PREDICTED: uncharacterized protein LOC105122743 isoform X2
TrEMBLA0A3N7F2S90.0A0A3N7F2S9_POPTR; Uncharacterized protein
STRINGPOPTR_0006s05310.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38722224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17460.18e-08TRF-like 3