PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG011447.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 458aa    MW: 49199.1 Da    PI: 8.1058
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG011447.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.21.1e-19218267255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f tae Aa+a+++a+++++g
  CCG011447.1 218 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFETAEAAARAYDEAALRFRG 267
                  7********.**********7.....337************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.6E-13218267IPR001471AP2/ERF domain
PROSITE profilePS5103225.686218275IPR001471AP2/ERF domain
SuperFamilySSF541714.9E-22218276IPR016177DNA-binding domain
SMARTSM003809.1E-37218281IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-32218276IPR001471AP2/ERF domain
CDDcd000182.05E-21218277No hitNo description
PRINTSPR003671.8E-11219230IPR001471AP2/ERF domain
PRINTSPR003671.8E-11241257IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MCVLKVANPR GNSGEYSRYP YTDSDDNQEE ISFTAQQIFS ELNQPIQRHV EVTQSPHMFM  60
GCSSSTEMSA MVSALTHVVS GHRGSTSDWG SCGASGLGGA TITSTFAQAA PGSNTSPASP  120
SLSAYSSTSG SGSWIGQKRG REKEAGAAAQ LKESLPTVHR GFYDFRSSLG DSSSSGATAT  180
EEVSASTLIF PTTATPSSKA TPSSETASLG ETGERKRRYR GVRQRPWGKW AAEIRDPHKA  240
ARVWLGTFET AEAAARAYDE AALRFRGSRA KLNFPENARL LPAQMQNVTA SQVPVSISQL  300
PSHHQLQSIS SPRQQAQRPQ VPAPALFQSQ PHIIRDYWEY SQLLQSSGDF HGQQQQQQPP  360
PSNLLDQMFY NPQLASLQSS TLSAFSSLPS STSGSSFAAI PSGSISSTPS PSASSYPLFF  420
SGQQLGYFRP PENQNPAAGL DFPVPPWTDS SRRPSSTD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-23217275160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011044262.10.0PREDICTED: ethylene-responsive transcription factor ABR1-like isoform X1
TrEMBLA0A2K2AJ340.0A0A2K2AJ34_POPTR; Uncharacterized protein
STRINGPOPTR_0005s21690.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49193253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.15e-27ethylene response factor 110