PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG011592.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB_related
Protein Properties Length: 337aa    MW: 36434.6 Da    PI: 7.3264
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG011592.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.17.5e-12102146347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+  ++ + ++lG+g+W+ Iar     R++ q+ s+ qky
      CCG011592.1 102 PWTEEEHRMFLLGLQKLGKGDWRGIARNYVISRSPTQVASHAQKY 146
                      8*****************************89************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.60.106.8E-4321IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129419.40495151IPR017930Myb domain
SuperFamilySSF466893.07E-1697152IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-1898150IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.2E-1099145IPR009057Homeodomain-like
SMARTSM007171.5E-1099149IPR001005SANT/Myb domain
PfamPF002491.9E-10102146IPR001005SANT/Myb domain
CDDcd001674.90E-9102147No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000122Biological Processnegative regulation of transcription from RNA polymerase II promoter
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0030307Biological Processpositive regulation of cell growth
GO:0046686Biological Processresponse to cadmium ion
GO:0048366Biological Processleaf development
GO:2000469Biological Processnegative regulation of peroxidase activity
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MTRRCSHCSH NGHNSRTCPN RVVKLFGVRL TDGSIRKSAS MGNLSLYTGS SNMGGPLASG  60
SNNPGSPVDT PDHGAATAAD GYASEDFVPG SSSSRERKKG VPWTEEEHRM FLLGLQKLGK  120
GDWRGIARNY VISRSPTQVA SHAQKYFIRQ SNMSRRKRRS SLFDIVADEQ LDTPMVSQDL  180
LSTNHPKVDT QIDNPLPAPP PLDEECESMD STNSNEGEPL PPKPDSSQPA YPVVYPAYFS  240
PFFPCSFPFW SGCIAEPSKT ETHEVLKPTA VHSKSPINVD EMVGMSKLSL GESIGDEGSS  300
SLSLKLLEGS SRQSAFHANP ASNSSGINRS SSPIHAV
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor (PubMed:23888064, PubMed:24806884). Direct regulator of the transcription of peroxidase (Prxs) and reactive oxygen species (ROS)-related genes via the recognition of 5'-ATCACA-3' motif (PubMed:24806884). Binds to 5'-TATCCA-3' motif (TA box) and represses the activity of corresponding promoters (e.g. sugar response genes) (PubMed:25920996). Regulates hypocotyl elongation in response to darkness by enhancing auxin accumulation in a phytochrome-interacting factor (PIF) proteins-dependent manner. Promotes lateral roots formation (PubMed:23888064). Promotes cell expansion during leaves development via the modulation of cell wall-located Prxs (PubMed:24806884). Plays a critical role in developmentally regulated and dark-induced onset of leaf senescence by repressing the transcription of several genes involved in chloroplast function and responses to light and auxin. Promotes responses to auxin, abscisic acid (ABA), and ethylene (PubMed:25920996). {ECO:0000269|PubMed:23888064, ECO:0000269|PubMed:24806884, ECO:0000269|PubMed:25920996}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00551DAPTransfer from AT5G47390Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by CdCl(2) (PubMed:16463103). Accumulates in the dark (PubMed:23888064, PubMed:25920996). Diurnal expression pattern with maximal levels in the morning (at protein level). Specifically induced during leaf expansion (PubMed:24806884). Expressed in old and dark-treated leaves (PubMed:25920996). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:23888064, ECO:0000269|PubMed:24806884, ECO:0000269|PubMed:25920996}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011002026.10.0PREDICTED: myb-like protein G
SwissprotQ9LVS01e-139KUA1_ARATH; Transcription factor KUA1
TrEMBLB9MUR90.0B9MUR9_POPTR; Uncharacterized protein
STRINGPOPTR_0001s15510.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72303145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.11e-123MYB_related family protein
Publications ? help Back to Top
  1. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]