PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG011675.2
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MIKC_MADS
Protein Properties Length: 241aa    MW: 27542.3 Da    PI: 9.9514
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG011675.2genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.61.3e-312474151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++g+lyeys+
  CCG011675.2 24 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSNRGRLYEYSN 74
                 79***********************************************95 PP
2K-box113.42.2e-37921884100
        K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                  s++ s++ea+a+ +qqe+akL+++i nLq+++R++lGe+L+ Ls+keL++Le +Lek++ +iRskKnell+++ie++qk+e +l+++n+ Lr+k++e
  CCG011675.2  92 SNNGSVSEANAQFYQQEAAKLRSQIGNLQNSNRNMLGESLSALSVKELKSLEIKLEKGIGRIRSKKNELLFAEIEYMQKREIDLHNNNQLLRAKIAE 188
                  444459****************************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.4031676IPR002100Transcription factor, MADS-box
SMARTSM004322.5E-401675IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.19E-331789IPR002100Transcription factor, MADS-box
CDDcd002651.67E-441793No hitNo description
PRINTSPR004049.0E-331838IPR002100Transcription factor, MADS-box
PROSITE patternPS0035001872IPR002100Transcription factor, MADS-box
PfamPF003191.2E-262572IPR002100Transcription factor, MADS-box
PRINTSPR004049.0E-333853IPR002100Transcription factor, MADS-box
PRINTSPR004049.0E-335374IPR002100Transcription factor, MADS-box
PfamPF014861.1E-27100186IPR002487Transcription factor, K-box
PROSITE profilePS5129714.873102192IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MAYQNESQGS SPLRKLGRGK VEIKRIENTT NRQVTFCKRR NGLLKKAYEL SVLCDAEVAL  60
IVFSNRGRLY EYSNNSVKST IERYKKACAD SSNNGSVSEA NAQFYQQEAA KLRSQIGNLQ  120
NSNRNMLGES LSALSVKELK SLEIKLEKGI GRIRSKKNEL LFAEIEYMQK REIDLHNNNQ  180
LLRAKIAENE RKREHMNLMP AGVNFEIMQS QPFDSRNYSQ VNGLPPANHY PHEDQMALQL  240
V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P1e-191684169Myocyte-specific enhancer factor 2B
1tqe_Q1e-191684169Myocyte-specific enhancer factor 2B
1tqe_R1e-191684169Myocyte-specific enhancer factor 2B
1tqe_S1e-191684169Myocyte-specific enhancer factor 2B
6c9l_A1e-191684169Myocyte-specific enhancer factor 2B
6c9l_B1e-191684169Myocyte-specific enhancer factor 2B
6c9l_C1e-191684169Myocyte-specific enhancer factor 2B
6c9l_D1e-191684169Myocyte-specific enhancer factor 2B
6c9l_E1e-191684169Myocyte-specific enhancer factor 2B
6c9l_F1e-191684169Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ7143860.0JQ714386.1 Populus simonii x Populus nigra isolate A flowering locus C (FLC1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011002033.11e-177PREDICTED: floral homeotic protein AGAMOUS-like
RefseqXP_011002034.11e-177PREDICTED: floral homeotic protein AGAMOUS-like
RefseqXP_011002035.11e-177PREDICTED: floral homeotic protein AGAMOUS-like
SwissprotQ408721e-134AG_PANGI; Floral homeotic protein AGAMOUS
TrEMBLO651121e-167O65112_POPTR; AGAMOUS homolog
STRINGEOY278721e-151(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68429102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-117MIKC_MADS family protein