PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG011772.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

G2-like

Protein Properties

Length: 612aa MW: 67026.5 Da PI: 7.0492

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG011772.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105.9	2.3e-33	317	371	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr+rWtpeLHerFveav++L G+ekAtPk +l+lm+vkgLt++hvkSHLQkYRl CCG011772.1 317 KPRMRWTPELHERFVEAVNKLDGAEKATPKGVLKLMNVKGLTIYHVKSHLQKYRL 371 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.005	314	374	IPR017930	Myb domain
SuperFamily	SSF46689	2.33E-18	315	371	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.2E-32	316	372	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.8E-25	317	372	IPR006447	Myb domain, plants
Pfam	PF00249	1.9E-9	319	370	IPR001005	SANT/Myb domain
Pfam	PF14379	3.7E-22	407	452	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 612 aa Download sequence Send to blast
MVEKKVAVLL RVAVKKCVRA CFLSRKLFAI DLAKRLHGDA STSRSVDEVW AIIMNHHAVV 60 SVTKSETSKG GTQPFCTTLF PVQNSLSGKS DCQTSLTGES SSPRPSPLIQ AESLGSPSKM 120 ELSTAQHQMY CLKFGPDSPL SPTSHVQSTK STFQRSSVFC TSLYLSSSSI SETNRQLGNL 180 PFLPHPPTYS HSVSATDSTK SPLLFSEDLS NQYDEEHSAA FMKDFLNLSG NASEGSFHGM 240 NYTGDNLELT EQLELQFLSD ELEIAITDHG ENPGLHEIYG TPETSSKPAT GFACNQDSPS 300 VDALSSHPSP GSSTAHKPRM RWTPELHERF VEAVNKLDGA EKATPKGVLK LMNVKGLTIY 360 HVKSHLQKYR LAKYLPEKKE EKKASCSEEK KVASINIDGD VKKKGTIQIT EALRMQMEVQ 420 KQLHEQLEVQ RTLQLRIEEH ARYLQKIIEQ QNAGSALLSP KNLSASTNPP KDSELPPPSP 480 SAVAESKIEL SSPLPSSKHK AADSDNFEKQ TSEKRIRLEE KSESASEDAV VEDPPLVMSC 540 GHTPRAPING HQGFDAAGRL DESLLSLQAY SQALLPVPSW KQGLPGDAGG NIVPKGNQMK 600 IFQHHHSNSA WT

Sequence ? help Back to Top

Protein Sequence Length: 612 aa Download sequence Send to blast

MVEKKVAVLL RVAVKKCVRA CFLSRKLFAI DLAKRLHGDA STSRSVDEVW AIIMNHHAVV  60
SVTKSETSKG GTQPFCTTLF PVQNSLSGKS DCQTSLTGES SSPRPSPLIQ AESLGSPSKM  120
ELSTAQHQMY CLKFGPDSPL SPTSHVQSTK STFQRSSVFC TSLYLSSSSI SETNRQLGNL  180
PFLPHPPTYS HSVSATDSTK SPLLFSEDLS NQYDEEHSAA FMKDFLNLSG NASEGSFHGM  240
NYTGDNLELT EQLELQFLSD ELEIAITDHG ENPGLHEIYG TPETSSKPAT GFACNQDSPS  300
VDALSSHPSP GSSTAHKPRM RWTPELHERF VEAVNKLDGA EKATPKGVLK LMNVKGLTIY  360
HVKSHLQKYR LAKYLPEKKE EKKASCSEEK KVASINIDGD VKKKGTIQIT EALRMQMEVQ  420
KQLHEQLEVQ RTLQLRIEEH ARYLQKIIEQ QNAGSALLSP KNLSASTNPP KDSELPPPSP  480
SAVAESKIEL SSPLPSSKHK AADSDNFEKQ TSEKRIRLEE KSESASEDAV VEDPPLVMSC  540
GHTPRAPING HQGFDAAGRL DESLLSLQAY SQALLPVPSW KQGLPGDAGG NIVPKGNQMK  600
IFQHHHSNSA WT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-25	317	374	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-25	317	374	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-25	317	374	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-25	317	374	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-25	317	374	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-25	317	374	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-25	317	374	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-25	317	374	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00354	DAP	Transfer from AT3G13040	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011031269.1	0.0	PREDICTED: protein PHR1-LIKE 1-like
Refseq	XP_011031270.1	0.0	PREDICTED: protein PHR1-LIKE 1-like
Refseq	XP_011031271.1	0.0	PREDICTED: protein PHR1-LIKE 1-like
Swissprot	Q949U2	1e-133	PHL6_ARATH; Myb family transcription factor PHL6
TrEMBL	A0A2K1ZLT0	0.0	A0A2K1ZLT0_POPTR; Uncharacterized protein
STRING	POPTR_0007s15110.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13469	19	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13040.2	1e-108	G2-like family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nguyen HT, et al. A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2. Plant Cell Physiol., 2016. 57(4): p. 784-97 [PMID:26872838]