PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG011804.2

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

GRF

Protein Properties

Length: 655aa MW: 71056.9 Da PI: 7.6974

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG011804.2	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	74.2	1.5e-23	276	320	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e CCG011804.2 276 DQEPGRCRRTDGKKWRCSRDAVADQKYCERHINRGRHRSRKPVEG 320 689***************************************985 PP
2	QLQ	57.6	3.7e-20	205	241	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+++L++Q+l+yKy+ a++PvP++L+ +++k CCG011804.2 205 GPFTPSQWMELEHQALIYKYITARVPVPSNLIIPLKK 241 59******************************99975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	3.3E-12	205	241	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	4.0E-14	206	239	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	22.49	206	241	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	24.796	276	320	IPR014977	WRC domain
Pfam	PF08879	4.0E-20	278	319	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 655 aa Download sequence Send to blast
MDFGVLGLEG LVGPESSSHA PPHVSLPETK PKFFGSVLTK QERPSSSASA SAQDDYWRAS 60 KMPKLDDFSS TKTMPLHQPA PLLRPNSMFS NDSRQQEHML SFSSPKPEAT SFLVKDAGLV 120 ERNTQNHTAL SFPYYQHAPL SASRSAEATP FLVKDAGLVE RNTQNHTALS FPYYQHAPLS 180 ASRSAGYGTG NLNASMHGPI TGVRGPFTPS QWMELEHQAL IYKYITARVP VPSNLIIPLK 240 KSLNPYGLPF SSAGSFPPSS LGWGTFHLGY PGNNTDQEPG RCRRTDGKKW RCSRDAVADQ 300 KYCERHINRG RHRSRKPVEG QTGHAAIGTA SSKVVPMSNS MSTSITTSGA TSNSIVITQQ 360 QLKNLQPAAA SNSSADARVN GAQDARRVSV MSSTMNRKSD DSTLSIPRQD ILTEQCSQAE 420 LGLVSYDSLL NPSQKSSYFN SKPYESILNF SAEESHDQHP LRQFIDDWPK DQSNRSVISW 480 PEELKSDCTQ LSMSISMVSS DFSSSSSSLL REKLAFSPLR LSSEFDPIQM GLRVSGDHNE 540 ASQKQANWIP ISWGTSIGGP LGEVLTTSAS HADSCKSSSA LDLLREGWDG SPQLGSSPTG 600 VLQKSTFGSL SNSSSGSSPR AESKKNNESA SLYEEAVGSI IASDPLFHPC NQENG

Sequence ? help Back to Top

Protein Sequence Length: 655 aa Download sequence Send to blast

MDFGVLGLEG LVGPESSSHA PPHVSLPETK PKFFGSVLTK QERPSSSASA SAQDDYWRAS  60
KMPKLDDFSS TKTMPLHQPA PLLRPNSMFS NDSRQQEHML SFSSPKPEAT SFLVKDAGLV  120
ERNTQNHTAL SFPYYQHAPL SASRSAEATP FLVKDAGLVE RNTQNHTALS FPYYQHAPLS  180
ASRSAGYGTG NLNASMHGPI TGVRGPFTPS QWMELEHQAL IYKYITARVP VPSNLIIPLK  240
KSLNPYGLPF SSAGSFPPSS LGWGTFHLGY PGNNTDQEPG RCRRTDGKKW RCSRDAVADQ  300
KYCERHINRG RHRSRKPVEG QTGHAAIGTA SSKVVPMSNS MSTSITTSGA TSNSIVITQQ  360
QLKNLQPAAA SNSSADARVN GAQDARRVSV MSSTMNRKSD DSTLSIPRQD ILTEQCSQAE  420
LGLVSYDSLL NPSQKSSYFN SKPYESILNF SAEESHDQHP LRQFIDDWPK DQSNRSVISW  480
PEELKSDCTQ LSMSISMVSS DFSSSSSSLL REKLAFSPLR LSSEFDPIQM GLRVSGDHNE  540
ASQKQANWIP ISWGTSIGGP LGEVLTTSAS HADSCKSSSA LDLLREGWDG SPQLGSSPTG  600
VLQKSTFGSL SNSSSGSSPR AESKKNNESA SLYEEAVGSI IASDPLFHPC NQENG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. microRNA396-GRF1/GRF3 regulatory module acts as a developmental regulator in the reprogramming of root cells during cyst nematode infection, leading to the formation of the syncytium. {ECO:0000269\|PubMed:12974814, ECO:0000269\|PubMed:15326298, ECO:0000269\|PubMed:22419826, ECO:0000269\|PubMed:22751317}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). Up-regulated in response to cyst nematode infection. {ECO:0000269\|PubMed:15200956, ECO:0000269\|PubMed:19453503, ECO:0000269\|PubMed:20023165, ECO:0000269\|PubMed:22419826}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GU282682	0.0	GU282682.1 Populus balsamifera isolate POR11 haplotype A unknown protein gene, partial sequence.
GenBank	GU282683	0.0	GU282683.1 Populus balsamifera isolate POR11 haplotype B unknown protein gene, partial sequence.
GenBank	GU282684	0.0	GU282684.1 Populus balsamifera isolate STO11 haplotype A unknown protein gene, partial sequence.
GenBank	GU282685	0.0	GU282685.1 Populus balsamifera isolate STO11 haplotype B unknown protein gene, partial sequence.
GenBank	GU282686	0.0	GU282686.1 Populus balsamifera isolate WHR03 haplotype A unknown protein gene, partial sequence.
GenBank	GU282687	0.0	GU282687.1 Populus balsamifera isolate WHR03 haplotype B unknown protein gene, partial sequence.
GenBank	GU282688	0.0	GU282688.1 Populus balsamifera isolate FBK13 haplotype A unknown protein gene, partial sequence.
GenBank	GU282689	0.0	GU282689.1 Populus balsamifera isolate FBK13 haplotype B unknown protein gene, partial sequence.
GenBank	GU282690	0.0	GU282690.1 Populus balsamifera isolate FRE01 haplotype A unknown protein gene, partial sequence.
GenBank	GU282691	0.0	GU282691.1 Populus balsamifera isolate FRE01 haplotype B unknown protein gene, partial sequence.
GenBank	GU282694	0.0	GU282694.1 Populus balsamifera isolate HAY07 haplotype A unknown protein gene, partial sequence.
GenBank	GU282695	0.0	GU282695.1 Populus balsamifera isolate HAY07 haplotype B unknown protein gene, partial sequence.
GenBank	GU282696	0.0	GU282696.1 Populus balsamifera isolate MGR10 haplotype A unknown protein gene, partial sequence.
GenBank	GU282697	0.0	GU282697.1 Populus balsamifera isolate MGR10 haplotype B unknown protein gene, partial sequence.
GenBank	GU282698	0.0	GU282698.1 Populus balsamifera isolate NWL07 haplotype A unknown protein gene, partial sequence.
GenBank	GU282699	0.0	GU282699.1 Populus balsamifera isolate NWL07 haplotype B unknown protein gene, partial sequence.
GenBank	GU282700	0.0	GU282700.1 Populus balsamifera isolate STL13 haplotype A unknown protein gene, partial sequence.
GenBank	GU282701	0.0	GU282701.1 Populus balsamifera isolate STL13 haplotype B unknown protein gene, partial sequence.
GenBank	GU282702	0.0	GU282702.1 Populus balsamifera isolate INU03 haplotype A unknown protein gene, partial sequence.
GenBank	GU282703	0.0	GU282703.1 Populus balsamifera isolate INU03 haplotype B unknown protein gene, partial sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011031322.1	0.0	PREDICTED: growth-regulating factor 1-like
Swissprot	O81001	1e-107	GRF1_ARATH; Growth-regulating factor 1
TrEMBL	A0A2K1ZLZ8	0.0	A0A2K1ZLZ8_POPTR; Uncharacterized protein
STRING	POPTR_0007s14720.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2085	34	81

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22840.1	1e-94	growth-regulating factor 1

Publications ? help Back to Top
Casadevall R,Rodriguez RE,Debernardi JM,Palatnik JF,Casati P Repression of growth regulating factors by the microRNA396 inhibits cell proliferation by UV-B radiation in Arabidopsis leaves. Plant Cell, 2013. 25(9): p. 3570-83 [PMID:24076976] Liu J,Rice JH,Chen N,Baum TJ,Hewezi T Synchronization of developmental processes and defense signaling by growth regulating transcription factors. PLoS ONE, 2014. 9(5): p. e98477 [PMID:24875638] Cao Y,Han Y,Jin Q,Lin Y,Cai Y Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa). Front Plant Sci, 2016. 7: p. 1750 [PMID:27933074]