PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG012004.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

bHLH

Protein Properties

Length: 179aa MW: 20429.7 Da PI: 8.9548

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG012004.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32.4	1.7e-10	13	64	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55 + +Er+RR ++++ +L +llP+ ++psk s + Le+A YIk+L+ CCG012004.1 13 RKTVERNRRIHMKDLCWKLASLLPPHLSEPSKDmQSQQDQLELAACYIKQLR 64 6789*******************558898888**************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.35E-4	6	68	No hit	No description
PROSITE profile	PS50888	10.22	8	63	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	8.51E-10	10	77	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.1E-9	10	76	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.004	14	69	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.4E-7	14	63	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 179 aa Download sequence Send to blast
MMKKNSETSR LDRKTVERNR RIHMKDLCWK LASLLPPHLS EPSKDMQSQQ DQLELAACYI 60 KQLRERVEGL KRVKEEQAIT TTRTSSSAMT SIMIGLRLPM VELRDFGSTI EVVLISGLNK 120 NFMFYEVINV LSEEGAEVVS ASYSTVGDKV FHTIHAQVRI SRVGVQTSRV CERLQELIC

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011044317.1	1e-130	PREDICTED: uncharacterized protein LOC105139543
Refseq	XP_011044318.1	1e-130	PREDICTED: uncharacterized protein LOC105139543
TrEMBL	B9I387	1e-118	B9I387_POPTR; Uncharacterized protein
STRING	POPTR_0012s08050.1	1e-119	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6849	21	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20970.1	8e-30	bHLH family protein