PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG012068.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 618aa    MW: 68039.9 Da    PI: 5.5224
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG012068.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.53.6e-143683148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd  l++ v+++G ++W+++ +  g+ R++k+c+ rw ++l
      CCG012068.1 36 KGPWSEEEDAMLIEHVNKYGERNWNAVHKLSGLPRCGKSCRVRWTTHL 83
                     79******************************99**********9986 PP
2Myb_DNA-binding48.42.1e-15122169148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT+ Ed +l+++v+++G g+W++  ++  + R++k+c++rw ++l
      CCG012068.1 122 KGPWTAAEDAILIEYVNKHGEGNWNALQKRSVLARCGKSCRLRWTNHL 169
                      79*******************************************996 PP
3Myb_DNA-binding49.41e-15175218146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g++++eE+ ++v++++q+G++ W++ a++++ gRt++++k++w++
      CCG012068.1 175 KGNFSAEEERIIVELHAQFGNK-WARMAARLP-GRTDNDIKNFWNT 218
                      79********************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.5933187IPR017930Myb domain
SMARTSM007171.2E-143585IPR001005SANT/Myb domain
PfamPF002497.7E-133683IPR001005SANT/Myb domain
SuperFamilySSF466899.64E-1837104IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-2037100IPR009057Homeodomain-like
CDDcd001672.27E-113883No hitNo description
PROSITE profilePS5129415.51117169IPR017930Myb domain
SuperFamilySSF466892.11E-29120216IPR009057Homeodomain-like
SMARTSM007171.5E-13121171IPR001005SANT/Myb domain
PfamPF002496.8E-14122169IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-23123176IPR009057Homeodomain-like
CDDcd001671.23E-11124169No hitNo description
PROSITE profilePS5129423.453170224IPR017930Myb domain
SMARTSM007172.3E-15174222IPR001005SANT/Myb domain
PfamPF002494.3E-14175218IPR001005SANT/Myb domain
CDDcd001672.27E-11177218No hitNo description
Gene3DG3DSA:1.10.10.601.5E-24177222IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 618 aa     Download sequence    Send to blast
MMELVGNIDG VGAKSEVGSS SMSKGGDEGS EFQLKKGPWS EEEDAMLIEH VNKYGERNWN  60
AVHKLSGLPR CGKSCRVRWT THLRPDAKEG AFSAEEDRII DELDSQISAS NDDEGGGGEL  120
KKGPWTAAED AILIEYVNKH GEGNWNALQK RSVLARCGKS CRLRWTNHLR PNLKKGNFSA  180
EEERIIVELH AQFGNKWARM AARLPGRTDN DIKNFWNTRT KRLLRHRLPL YPPEILPLNP  240
PSPQHDNNDN DNKKSHSLPS TPTSSFTFPT TQLLSPTTPT NPQNNLTSPA PPPILQIPPR  300
FKNFSQSSSA TSPNNTTIVN TPPTSHSITV PASYFSLPSS PLPAITSPSN TSPLSYEIPC  360
CFTNLLSSNS SEFHKEMERE NEKLCLLLAS VTQTDHLPFA QLLSPTSLNW NSASSSVPTT  420
TTNTTAMPAK IGRTRIRRMK NVTTSGKGKR NSIGFGATES SRMGLLQDDL LQEFKAALEV  480
NEKDTSTEQS HLVFQDAQQK PKELMFEDFC GIQYSDLSSS LSLSSELTPT DGEVAEQLNS  540
SMTDDLTKLL DIFPSSPLQL SDLYTDDISN GQTSVIIDDN NMDIDMQQQI ALLFPTTATD  600
QGGRAVGTGS WDSLPGIY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C1e-30332223157MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-30332223157MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (PubMed:24278028). Binds to 5'-CAACTGTC-3' and/or 5'-TAACAAA-3' motif in target gene promoter to promote their expression (By similarity). Together with MYB101 and MYB120, functions as a male factor that controls pollen tube-synergid interaction in fertilization. Required for pollen tube growth arrest and sperm cell release in the female gametophyte, probably via the regulation of pollen tube-specific gene expression (PubMed:24278028, PubMed:23791732). {ECO:0000250|UniProtKB:O80883, ECO:0000269|PubMed:23791732, ECO:0000269|PubMed:24278028}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006376488.10.0myb protein
SwissprotQ9S7733e-66MYB97_ARATH; Transcription factor MYB97
TrEMBLB9N5V30.0B9N5V3_POPTR; Uncharacterized protein
STRINGPOPTR_0013s13450.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2815233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06100.12e-51myb domain protein 33
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Zheng Z, et al.
    Target RNA Secondary Structure Is a Major Determinant of miR159 Efficacy.
    Plant Physiol., 2017. 174(3): p. 1764-1778
    [PMID:28515145]