PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG012101.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 143aa    MW: 15839.2 Da    PI: 9.5151
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG012101.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.75.7e-0533721054
                 HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                 + R +++ +++  L++l+ +      +K + a++L +A++YI+ L
  CCG012101.1 33 KERKEKLGERIVALQQLVSPY-----GKTDTASVLMEAMDYIRFL 72
                 66788889999999**99999.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.105.5E-102286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.5342372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.22E-122985IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.00152978IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.36E-63377No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MMENKRSPCS VDHASLTSLA TKRHKADFSI STKERKEKLG ERIVALQQLV SPYGKTDTAS  60
VLMEAMDYIR FLHEQVQVLS APYLQGTSTA QMQEFGQYSL RNKGLCLVPT SCTAGIARSN  120
GADIWAPIKS PSPKFNKDVS PFQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011037391.11e-105PREDICTED: transcription factor bHLH113
SwissprotQ7XJU22e-62BH153_ARATH; Transcription factor bHLH153
TrEMBLU5FT801e-101U5FT80_POPTR; BHLH family protein
STRINGPOPTR_0013s13050.11e-102(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108133138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05710.51e-64bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]