PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG012157.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 110aa    MW: 12612.4 Da    PI: 9.6792
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG012157.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.58.3e-12590189
                 EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
           B3  1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89
                 f k+l  +d   ++rl l+ ++++++  g    +  l+++de+g++W++++++  +++++  l++ W  Fv++++Lk+gD++ + ld++++
  CCG012157.1  5 FTKKL--NDIDIERRLLLSENCIKDFpRGH---EAYLKFKDEDGQVWTFRCRVpPGGGSKPALSGDWFVFVRSKHLKVGDVIEIALDREKD 90
                 66777..67777788999999999995333...346***************99544444599********************999987644 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508639.1221105IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.2E-13490IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.00145105IPR003340B3 DNA binding domain
CDDcd100177.23E-155103No hitNo description
SuperFamilySSF1019363.53E-12589IPR015300DNA-binding pseudobarrel domain
PfamPF023622.4E-9690IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 110 aa     Download sequence    Send to blast
MEKNFTKKLN DIDIERRLLL SENCIKDFPR GHEAYLKFKD EDGQVWTFRC RVPPGGGSKP  60
ALSGDWFVFV RSKHLKVGDV IEIALDREKD QAAGEQFTIK VKKTTSATRN
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2091941e-163AC209194.1 Populus trichocarpa clone POP091-C08, complete sequence.
GenBankAC2139261e-163AC213926.1 Populus trichocarpa clone POP063-D18, complete sequence.
GenBankAC2141001e-163AC214100.1 Populus trichocarpa clone POP063-I02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011002452.14e-68PREDICTED: double-stranded RNA-binding protein 3-like
TrEMBLA0A2K2AZU28e-74A0A2K2AZU2_POPTR; Uncharacterized protein
STRINGPOPTR_0003s00440.17e-74(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13561527