PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG012165.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 134aa    MW: 15385.8 Da    PI: 7.7759
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG012165.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3331.1e-10797189
                 EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE.....EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
           B3  1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliy...rkksgr...yvltkGWkeFvkangLkegDfvvFkldgrse 89
                 f k+l  + ++ s+ l++p + +e++   +g +  +      d + ++W++ l+             ++l++ W +Fv+++gL  gD vvF +++++e
  CCG012165.1  7 FTKKL--KPTHISHTLSVPTHVLEAFpipEGAHILN--FEAVDATDNTWRFCLSTrltGA---YakpVLLRSSWGRFVEQKGLAPGDRVVFFMQRDDE 97
                 67777..334444569*******9995553333343..44458888*******7655333...2446***********************99776633 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.6E-14397IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.44E-12396IPR015300DNA-binding pseudobarrel domain
CDDcd100178.12E-11596No hitNo description
PfamPF023628.8E-8797IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MEQVHLFTKK LKPTHISHTL SVPTHVLEAF PIPEGAHILN FEAVDATDNT WRFCLSTRLT  60
GAYAKPVLLR SSWGRFVEQK GLAPGDRVVF FMQRDDEAND NMIRRYTVRA QRKVMILMGQ  120
DVWVDVEDLP LHGL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2165931e-149AC216593.1 Populus trichocarpa clone POP016-L16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011002458.12e-97PREDICTED: putative AP2/ERF and B3 domain-containing protein Os01g0140700
TrEMBLA0A3N7ELH62e-79A0A3N7ELH6_POPTR; Uncharacterized protein
STRINGcassava4.1_027512m1e-46(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1390729
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25730.12e-07ethylene response DNA binding factor 3