PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG012167.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 141aa    MW: 15783.8 Da    PI: 7.0274
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG012167.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.98.1e-091738627
                 -SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH  6 CrffartGtCkyGdrCkFaHgp 27
                 C+++ +tG C+ G++C+++H++
  CCG012167.1 17 CPTYEATGSCPQGSKCNRHHPK 38
                 ********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902297.06E-51036IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.5071139IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.7E-41633IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-61738IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MQYNSAIQCL KKHSYVCPTY EATGSCPQGS KCNRHHPKNR SKEKKSKRSR DNNAQGRYFG  60
LMHTSTTELR NPVPVKPNVL DNDAISFKGS IADYISLDVI DEVVENTIPA DEHTALGDSD  120
PLELQLGDLD ELIKPVRIMN I
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011002423.11e-102PREDICTED: zinc finger CCCH domain-containing protein 7-like
TrEMBLA0A3N7F0J24e-81A0A3N7F0J2_POPTR; Uncharacterized protein
TrEMBLA0A3N7F5X43e-81A0A3N7F5X4_POPTR; Uncharacterized protein
TrEMBLA0A3N7FW993e-81A0A3N7FW99_POPTR; Uncharacterized protein
STRINGPOPTR_0002s07810.12e-61(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF61031010