PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG012198.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 120aa    MW: 13758.3 Da    PI: 11.6275
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG012198.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.29.7e-161090987
                 HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
           B3  9 dvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgr 87
                  + +++rl++p +f+++      g+     ++   +de+g+ W +++++rk+++    vlt+GW  Fvk+++L++gD v F   +r
  CCG012198.1 10 KTDTKKRLSVPTRFLRSLppfklGS---HAVKFEATDEKGEAWPFQCSIRKRGQYpkPVLTRGWVAFVKSKKLRVGDKVRFI--KR 90
                 4556778*********999985332...456788889**********9988888889**********************998..22 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508639.8122106IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.5E-19495IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.0E-64102IPR003340B3 DNA binding domain
SuperFamilySSF1019361.96E-14596IPR015300DNA-binding pseudobarrel domain
CDDcd100174.94E-18687No hitNo description
PfamPF023627.4E-131194IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    Send to blast
MAQVSKILKK TDTKKRLSVP TRFLRSLPPF KLGSHAVKFE ATDEKGEAWP FQCSIRKRGQ  60
YPKPVLTRGW VAFVKSKKLR VGDKVRFIKR ENRATATISY KVRAEKAIKI FGATFGYARI
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2134281e-152AC213428.1 Populus trichocarpa clone POP094-E14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011003897.12e-82PREDICTED: B3 domain-containing transcription factor NGA4-like
TrEMBLU7DXJ12e-69U7DXJ1_POPTR; Uncharacterized protein
STRINGPOPTR_0492s00200.13e-70(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2060778
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34390.17e-09auxin response factor 22