PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG012550.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

C2H2

Protein Properties

Length: 784aa MW: 86006 Da PI: 9.7788

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG012550.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11	0.0014	618	641	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 +kC++C+k+F+ +L +H + H CCG012550.1 618 WKCGYCKKHFRAEKYLDQHFDNrH 641 58*****************76666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF09429	2.7E-23	7	82	IPR019007	WW domain binding protein 11
Pfam	PF12622	3.3E-11	126	181	No hit	No description
PROSITE pattern	PS00028	0	620	641	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006396	Biological Process	RNA processing
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 784 aa Download sequence Send to blast
MKTTKGGKVM NPTDAYRKEL RKKELKRNKK ERKKVREVGI LKKDPDVIKE QIEKLDLMKA 60 DGALDKARKH KKRQLEDTLS LVIKKRREYE DKMKEKGETP VMFSHLGPLR RRTSAEEEER 120 ARHPKPEDSV YYHPTMNPTG APPPGKPPMY KSSIGPRIPL SGGSSSTAES EDAALVVPPP 180 LPESGELGPS DGSAIPALLP LPPPPPLPPM PAAPSLGMSL PPPPLPPPPP GPPPNDQVSS 240 HISVPPPPPL QQSAQPPPPP GTNESGSETT ISALLDESSS KDNAQVPASL PPPPPIAMQL 300 KSANSLSEGT SSEADANTAA TMDNPKMVPP PPPPRQQPLA PGQALTPTLQ PDVLPPGISR 360 FPPPPPPPNV RPPLSSSGIP GQVAPPGVML PLIPRPPYGP PPGPPPMMRP PLPPGPPPFF 420 QEDAANRPHV PQKPSYVKSA ASTVVKRPLA QHTPELTAMV PASVRVRREA AIPKPKPKAV 480 TSTTAVATRP AAPTTVKPES TNSSSAPKSK SIDDSYTAFL EDMKALVWFP FTLHFQHLTE 540 DVGEHVAART FNQEEGHAHK VHCSRERSRA AWQAIEEYLM PFVEREQYQI SSKCRLHPSN 600 DLFRDQEEHK IHVDINEWKC GYCKKHFRAE KYLDQHFDNR HYNLLNISDG KCLADLCGAL 660 HCDFMMDSKS TKTKCNPAAV AKNHHLCESL ADSCFPLNQG PSASRLHELF LHQFCDAHTC 720 SGKRKLFPKG GKKKTSVFYL AISILTMMMI PLFYLIVYLH QCEMRKGTQE LRRISKVGRK 780 TKPS

Sequence ? help Back to Top

Protein Sequence Length: 784 aa Download sequence Send to blast

MKTTKGGKVM NPTDAYRKEL RKKELKRNKK ERKKVREVGI LKKDPDVIKE QIEKLDLMKA  60
DGALDKARKH KKRQLEDTLS LVIKKRREYE DKMKEKGETP VMFSHLGPLR RRTSAEEEER  120
ARHPKPEDSV YYHPTMNPTG APPPGKPPMY KSSIGPRIPL SGGSSSTAES EDAALVVPPP  180
LPESGELGPS DGSAIPALLP LPPPPPLPPM PAAPSLGMSL PPPPLPPPPP GPPPNDQVSS  240
HISVPPPPPL QQSAQPPPPP GTNESGSETT ISALLDESSS KDNAQVPASL PPPPPIAMQL  300
KSANSLSEGT SSEADANTAA TMDNPKMVPP PPPPRQQPLA PGQALTPTLQ PDVLPPGISR  360
FPPPPPPPNV RPPLSSSGIP GQVAPPGVML PLIPRPPYGP PPGPPPMMRP PLPPGPPPFF  420
QEDAANRPHV PQKPSYVKSA ASTVVKRPLA QHTPELTAMV PASVRVRREA AIPKPKPKAV  480
TSTTAVATRP AAPTTVKPES TNSSSAPKSK SIDDSYTAFL EDMKALVWFP FTLHFQHLTE  540
DVGEHVAART FNQEEGHAHK VHCSRERSRA AWQAIEEYLM PFVEREQYQI SSKCRLHPSN  600
DLFRDQEEHK IHVDINEWKC GYCKKHFRAE KYLDQHFDNR HYNLLNISDG KCLADLCGAL  660
HCDFMMDSKS TKTKCNPAAV AKNHHLCESL ADSCFPLNQG PSASRLHELF LHQFCDAHTC  720
SGKRKLFPKG GKKKTSVFYL AISILTMMMI PLFYLIVYLH QCEMRKGTQE LRRISKVGRK  780
TKPS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	70	86	KKRQLEDTLSLVIKKRR

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the regulation of flowering time (By similarity). Plays an important role during the early flowering of precocious trifoliate orange (PubMed:21533840). {ECO:0000250\|UniProtKB:Q9LV14, ECO:0000269\|PubMed:21533840}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011024091.1	0.0	PREDICTED: formin-like protein 5
Swissprot	G3CHK5	1e-145	ELF5_PONTR; Protein EARLY FLOWERING 5
TrEMBL	A0A2K1XKA6	0.0	A0A2K1XKA6_POPTR; Uncharacterized protein
TrEMBL	A0A385JIQ4	0.0	A0A385JIQ4_POPTO; Early flower 5
STRING	POPTR_0015s10190.1	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63280.1	1e-109	C2H2-like zinc finger protein

Publications ? help Back to Top
Zhang JZ, et al. Molecular cloning and functional characterization of genes associated with flowering in citrus using an early-flowering trifoliate orange (Poncirus trifoliata L. Raf.) mutant. Plant Mol. Biol., 2011. 76(1-2): p. 187-204 [PMID:21533840]