PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG012840.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 370aa    MW: 41542.5 Da    PI: 6.6666
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG012840.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.61e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+l ++++++G g+W+++++  g+ R++k+c++rw +yl
      CCG012840.1 14 KGLWSPEEDERLFNYITRFGVGCWSSVPKLAGLQRCGKSCRLRWINYL 61
                     678*******************************************97 PP
2Myb_DNA-binding45.71.5e-1467111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg ++++E++l++  ++ lG++ W+ Ia+ ++ gRt++++k++w++ 
      CCG012840.1  67 RGMFSQQEEDLIISFHEVLGNR-WAQIAAQLP-GRTDNEIKNYWNSC 111
                      788*******************.*********.***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.9E-25664IPR009057Homeodomain-like
PROSITE profilePS5129424.195965IPR017930Myb domain
SuperFamilySSF466898.24E-2912108IPR009057Homeodomain-like
SMARTSM007171.0E-111363IPR001005SANT/Myb domain
PfamPF002492.6E-141461IPR001005SANT/Myb domain
CDDcd001671.55E-101761No hitNo description
Gene3DG3DSA:1.10.10.604.3E-2565116IPR009057Homeodomain-like
PROSITE profilePS5129419.47366116IPR017930Myb domain
SMARTSM007174.1E-1366114IPR001005SANT/Myb domain
PfamPF002491.5E-1367111IPR001005SANT/Myb domain
CDDcd001674.66E-1070109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MGRHSCCLKQ KLRKGLWSPE EDERLFNYIT RFGVGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGMF SQQEEDLIIS FHEVLGNRWA QIAAQLPGRT DNEIKNYWNS CLKKKLMKQG  120
IDPATHKPLS QVEAKEEKIC TEKASFQIPQ SKGLPILSNF SAPEPAFIIN DTACNSSGLT  180
EASREQFINK QAYDPLAYFE FPPSIVATGY NSNLSSAYHP TVRPLDQNQF ETSSNFVFTS  240
MPSLTSFDHG SMSGTDFSDN SASRMSSMFL NEAKESSSNS SNISNYAGYR MSNMVENAAG  300
FSSWDSDDKL ESVFQYQQVN GIKTGELKPS PWHEAGHLHA HQNSVDFSSC PLTSLSEDLK  360
GENFDGFHLI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-29121165108B-MYB
1h8a_C1e-28711620128MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB9707850.0AB970785.1 Populus tremula x Populus tremuloides PtxtMYB148 mRNA for MYB transcriptional factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011047816.10.0PREDICTED: protein ODORANT1-like
TrEMBLA0A0E4B7V90.0A0A0E4B7V9_POPPZ; MYB transcriptional factor
STRINGPOPTR_0012s08600.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58313353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.15e-82myb domain protein 86