PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG012953.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 294aa    MW: 33589.4 Da    PI: 5.0249
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG012953.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.72e-162471148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd ll++++  +G g+W++ ar+ g++Rt+k+c++rw++yl
      CCG012953.1 24 KGPWTIEEDSLLAHYISIHGEGHWNSAARCAGLKRTGKSCRLRWLNYL 71
                     79********************************************97 PP
2Myb_DNA-binding46.86.8e-1577120146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T  E++l+++++ ++G++ W++Ia++++ gRt++++k++w++
      CCG012953.1  77 RGNITLKEQLLILQLHSRWGNR-WSKIAQMLP-GRTDNEIKNYWRT 120
                      78999*****************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.2971971IPR017930Myb domain
SuperFamilySSF466898.99E-3021118IPR009057Homeodomain-like
SMARTSM007171.7E-112373IPR001005SANT/Myb domain
PfamPF002492.5E-142471IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-202578IPR009057Homeodomain-like
CDDcd001671.70E-92671No hitNo description
PROSITE profilePS5129422.33772126IPR017930Myb domain
SMARTSM007173.1E-1376124IPR001005SANT/Myb domain
PfamPF002498.2E-1477120IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-2179125IPR009057Homeodomain-like
CDDcd001675.13E-1081120No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0016036Biological Processcellular response to phosphate starvation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MDAQARKHGY AGTQSEDQGM SIRKGPWTIE EDSLLAHYIS IHGEGHWNSA ARCAGLKRTG  60
KSCRLRWLNY LRPNVRRGNI TLKEQLLILQ LHSRWGNRWS KIAQMLPGRT DNEIKNYWRT  120
RVQKQAKQLK CDVNSKQFRD TMRYVWIPQL IEKIGAESES PMDQPTISPP TYYSSQIDIP  180
VTASESGSDL IDPDFMPDIS VSSTFSDSLD AQVSPWSDLT DYQNPPCGQY YSDSMQNGSS  240
LCPENDSSSW SWCQDGVDMQ GVEQERYGFI GGGDSLDQSL WNEENIWFLQ QQLM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-232112624128MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011002746.10.0PREDICTED: transcription factor MYB108-like
TrEMBLA0A3N7EJQ80.0A0A3N7EJQ8_POPTR; Uncharacterized protein
STRINGPOPTR_0002s19250.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87534125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47190.18e-80myb domain protein 2