PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG012993.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

C2H2

Protein Properties

Length: 760aa MW: 82317.2 Da PI: 8.5647

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG012993.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15	7.4e-05	41	61	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++Cgk F r nL+ H r H CCG012993.1 41 CEICGKGFQRDQNLQLHRRGH 61 ******************988 PP
2	zf-C2H2	12.7	0.00038	115	137	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H +t+ CCG012993.1 115 WKCEKCSKRYAVQSDWKAHSKTC 137 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	7.1E-5	38	61	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	4.68E-6	38	61	No hit	No description
PROSITE profile	PS50157	11.489	39	61	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.076	39	61	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	41	61	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	2.8E-4	103	136	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	4.68E-6	110	135	No hit	No description
SMART	SM00355	130	115	135	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 760 aa Download sequence Send to blast
MATEEAITSS NNGFVENPVD PEAEVIALSP KTLMATNRFL CEICGKGFQR DQNLQLHRRG 60 HNLPWKLKQR TNKEVKKRVY VCPEKTCVHH HPSRALGDLT GIKKHFCRKH GEKKWKCEKC 120 SKRYAVQSDW KAHSKTCGTR EYKCDCGTLF SRRDSFITHR AFCDALAEET ARVNAVSSIN 180 NLAAGSINYH LMGNPLGPTM AQHFSTIFKP ISSNDHQTRQ GGVSLWMNQG VPQVSEAMGN 240 NIQEIHQLRS VTSSGAMFGD LLAVSCSHAP PSDHYQLNWP VFGNKISSNN AHEELTSTLV 300 LPLTNVKEAA AASQLASVPS LYSTQQQQSH QTTSANMSAT ALLQKAAQIG ATSTDPSFLG 360 SFALKSNANK VQDGNKFCGL YGSSPVSTNP ASDVENSGSD QISSLNQLQM YPKRQKIFQS 420 DQDSPAGGQT RDFLGVGRAN SSGSKARVLH LLSSIIAFVS RRDSFITHRA FCDALAEETA 480 RVNAVSSINN LAAGSINYHL MGNPLGPTMA QHFSTIFKPI SSNDHQTRQG GVSLWMNQGV 540 PQVSEAMGNN IQEIHQLRSV TSSGAMFGDL LAVSCSHAPP SDHYQLNWPV FGNKISSNNA 600 HEELTSTLVL PLTNVKEAAA ASQLASVPSL YSTQQQQSHQ TTSANMSATA LLQKAAQIGA 660 TSTDPSFLGS FALKSNANKV QDGNKFCGLY GSSPVSTNPA SDVENSGSDQ ISSLNQLQMY 720 PKRQKIFQSD QDSPAGGQTR DFLGVGVQAI CYPSSMNGWI

Sequence ? help Back to Top

Protein Sequence Length: 760 aa Download sequence Send to blast

MATEEAITSS NNGFVENPVD PEAEVIALSP KTLMATNRFL CEICGKGFQR DQNLQLHRRG  60
HNLPWKLKQR TNKEVKKRVY VCPEKTCVHH HPSRALGDLT GIKKHFCRKH GEKKWKCEKC  120
SKRYAVQSDW KAHSKTCGTR EYKCDCGTLF SRRDSFITHR AFCDALAEET ARVNAVSSIN  180
NLAAGSINYH LMGNPLGPTM AQHFSTIFKP ISSNDHQTRQ GGVSLWMNQG VPQVSEAMGN  240
NIQEIHQLRS VTSSGAMFGD LLAVSCSHAP PSDHYQLNWP VFGNKISSNN AHEELTSTLV  300
LPLTNVKEAA AASQLASVPS LYSTQQQQSH QTTSANMSAT ALLQKAAQIG ATSTDPSFLG  360
SFALKSNANK VQDGNKFCGL YGSSPVSTNP ASDVENSGSD QISSLNQLQM YPKRQKIFQS  420
DQDSPAGGQT RDFLGVGRAN SSGSKARVLH LLSSIIAFVS RRDSFITHRA FCDALAEETA  480
RVNAVSSINN LAAGSINYHL MGNPLGPTMA QHFSTIFKPI SSNDHQTRQG GVSLWMNQGV  540
PQVSEAMGNN IQEIHQLRSV TSSGAMFGDL LAVSCSHAPP SDHYQLNWPV FGNKISSNNA  600
HEELTSTLVL PLTNVKEAAA ASQLASVPSL YSTQQQQSHQ TTSANMSATA LLQKAAQIGA  660
TSTDPSFLGS FALKSNANKV QDGNKFCGLY GSSPVSTNPA SDVENSGSDQ ISSLNQLQMY  720
PKRQKIFQSD QDSPAGGQTR DFLGVGVQAI CYPSSMNGWI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	1e-36	111	180	3	72	Zinc finger protein JACKDAW
5b3h_F	1e-36	111	180	3	72	Zinc finger protein JACKDAW
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA sequence 5'-CTTTTGTCC-3' (PubMed:21265895, PubMed:25929516). Regulates photoperiodic flowering by modulating sugar transport and metabolism (PubMed:21265895, PubMed:25929516). Regulates SUS1 and SUS4 (PubMed:21265895). Transcription factor that regulates tissue boundaries and asymmetric cell division (PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:25829440). {ECO:0000269\|PubMed:21265895, ECO:0000269\|PubMed:25829440, ECO:0000269\|PubMed:25929516}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by 'SHORT-ROOT' (SHR)(PubMed:16640459). Strongly down-regulated by sugar deprivation, but not regulated by day-length. {ECO:0000269\|PubMed:16640459}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011043608.1	0.0	PREDICTED: zinc finger protein NUTCRACKER-like
Swissprot	Q9FFH3	1e-137	IDD8_ARATH; Zinc finger protein NUTCRACKER
TrEMBL	U5FMI7	0.0	U5FMI7_POPTR; C2H2 family protein
STRING	POPTR_0017s04840.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4626	29	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44160.1	1e-136	C2H2-like zinc finger protein

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755] Long Y, et al. In vivo FRET-FLIM reveals cell-type-specific protein interactions in Arabidopsis roots. Nature, 2017. 548(7665): p. 97-102 [PMID:28746306]