PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG012995.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

HD-ZIP

Protein Properties

Length: 179aa MW: 20199.8 Da PI: 7.6286

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG012995.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.6	2.1e-18	21	74	4	57
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 + ++ ++ql+ Le+ F+ n++++ae+++eLA++lg++ +qV +W+qNrRa++k+ CCG012995.1 21 KKRLARDQLNLLETSFNANQKLKAEHKTELARQLGVPPKQVAIWYQNRRARHKN 74 456899**********************************************95 PP
2	HD-ZIP_I/II	96	3.9e-31	20	111	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +k+rl+++q++lLE+sF++++kL+ e+K+elar+Lg+ p+qva+W+qnrRAR+k+ +E+dy ++ ++ ++ +en rLek+v+ L+ el++ CCG012995.1 20 RKKRLARDQLNLLETSFNANQKLKAEHKTELARQLGVPPKQVAIWYQNRRARHKNDAIEHDYMNIQLELGNVLAENIRLEKQVSMLKFELNK 111 89************************************************************************************998875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.96E-16	6	74	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.904	15	75	IPR001356	Homeobox domain
SMART	SM00389	3.7E-15	18	79	IPR001356	Homeobox domain
Pfam	PF00046	9.9E-16	20	74	IPR001356	Homeobox domain
CDD	cd00086	7.47E-14	20	74	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.3E-17	23	81	IPR009057	Homeodomain-like
PRINTS	PR00031	1.8E-5	46	55	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	50	73	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.8E-5	55	71	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 179 aa Download sequence Send to blast
MDSSLHHQSQ SQGNRPLKPR KKRLARDQLN LLETSFNANQ KLKAEHKTEL ARQLGVPPKQ 60 VAIWYQNRRA RHKNDAIEHD YMNIQLELGN VLAENIRLEK QVSMLKFELN KVQQMILFGS 120 TSSAATLPSV SGSSDEQANS SSPGNMICNW GDAGNDDIFP VEELYTCLIG SETQLWPLN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006372763.1	1e-128	homeobox-leucine zipper protein ATHB-52
TrEMBL	U5FHZ5	1e-126	U5FHZ5_POPTR; Uncharacterized protein
STRING	POPTR_0017s04820.1	1e-122	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF16535	5	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53980.1	4e-21	homeobox protein 52