PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG013055.2

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

LBD

Protein Properties

Length: 218aa MW: 24186.4 Da PI: 5.1867

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG013055.2	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	126.3	1.5e-39	7	107	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 +C aCk+lrrkC+++Cv+apyf+ +q +++fa+vhk+FGasnv+kll +lp ++r da+ ++ yeA ar+rdP+yG+v++i++lqqq+++l++e++ l CCG013055.2 7 SCGACKFLRRKCTSECVFAPYFCYDQaAAHFAAVHKVFGASNVSKLLLHLPVHNRGDAAITISYEALARMRDPIYGCVAHIFALQQQVASLQEEIEIL 104 6**********************978******************************************************************99 PP DUF260 98 kee 100 +++ CCG013055.2 105 ENQ 107 887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.347	6	108	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.4E-37	7	104	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence Send to blast
MTGLGSSCGA CKFLRRKCTS ECVFAPYFCY DQAAAHFAAV HKVFGASNVS KLLLHLPVHN 60 RGDAAITISY EALARMRDPI YGCVAHIFAL QQQVASLQEE IEILENQMAS LPVGVAGFGS 120 SPTISNTNCE MLFSFQQDAM NTQYYQNPQS AQLNHSGYTT GNQTFDGQMS MPLPPLYGWE 180 DHDIFCNSHP RPLERLLEEV DKEIFAYCSW PDSGNIII

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-34	3	108	7	111	LOB family transfactor Ramosa2.1
5ly0_B	1e-34	3	108	7	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin. {ECO:0000269\|PubMed:17259263}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011002633.1	1e-165	PREDICTED: LOB domain-containing protein 29-like
Swissprot	Q9LHS8	5e-57	LBD33_ARATH; LOB domain-containing protein 33
TrEMBL	B9HT79	1e-158	B9HT79_POPTR; Uncharacterized protein
STRING	POPTR_0010s20800.1	1e-159	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9196	32	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06080.1	9e-48	LOB domain-containing protein 33

Publications ? help Back to Top
Bargmann BO,Birnbaum KD,Brenner ED An undergraduate study of two transcription factors that promote lateral root formation. Biochem Mol Biol Educ, 2014 May-Jun. 42(3): p. 237-45 [PMID:24615800]