PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG013099.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 214aa    MW: 24241.3 Da    PI: 8.4622
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG013099.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.61.3e-092474355
                 HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                 +  +++Er+RR++++s +++L +llP+ +    ++     +   +A++YIksL+
  CCG013099.1 24 TERKIVERNRRNQMKSLYSNLNSLLPNrN---FKEAQPLPDQIDRAINYIKSLE 74
                 66789**********************55...677799999***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.54E-122198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.8872173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.9E-112393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.51E-52378No hitNo description
PfamPF000108.4E-62474IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.5E-42779IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MVAKTGGTIM QSRSSRSNIS STKTERKIVE RNRRNQMKSL YSNLNSLLPN RNFKEAQPLP  60
DQIDRAINYI KSLEEKLEKA REKKESLRSR KRSYTCTFDP ISSAASKSPQ LKIHEIGSAL  120
EIVLTSGLDN QFLFYEIISI LHEEGVEVVS ANFQALGDSL FHIVHAQMKG SADGFGAARV  180
TERLNRFISG STSEIELDSE LWDFANHPET NWEF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011002885.11e-158PREDICTED: transcription factor bHLH118-like isoform X4
TrEMBLU5FEU01e-140U5FEU0_POPTR; Uncharacterized protein
STRINGPOPTR_0019s13090.11e-140(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9063498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.11e-17bHLH family protein