PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG013136.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

M-type_MADS

Protein Properties

Length: 160aa MW: 18490.5 Da PI: 9.5948

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG013136.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	54	2.1e-17	16	53	8	45
HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 rq +skR+ gilKKA+EL +LCd++ a+++fs+tgk CCG013136.1 16 ARQAKYSKRKIGILKKAKELAILCDIDLALLMFSPTGK 53 69999********************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	22.119	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	2.1E-22	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	3.92E-21	2	83	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.3E-15	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.6E-17	14	55	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.3E-15	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.3E-15	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 160 aa Download sequence Send to blast
MGRRRLQIQR LECVKARQAK YSKRKIGILK KAKELAILCD IDLALLMFSP TGKPTLYVGQ 60 DKDLSAVLER MSALTFEERE ERMSALTFEE REERDWTNPD KINDLRQIKI MEEHLVATLA 120 RVKSKKGVMD LRTQDAQLPG SSMESFFRQT ASLCAFLHNE

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms a heterodimer with the MADS-box protein AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011002840.1	8e-61	PREDICTED: MADS-box transcription factor ANR1-like
Swissprot	Q7X9I0	3e-22	AGL65_ARATH; Agamous-like MADS-box protein AGL65
TrEMBL	A0A2H5NBQ5	3e-47	A0A2H5NBQ5_CITUN; Uncharacterized protein
TrEMBL	B9IKF0	1e-47	B9IKF0_POPTR; Uncharacterized protein
STRING	EOY30051	6e-47	(Theobroma cacao)
STRING	POPTR_0018s08400.1	2e-48	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF20519	5	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26320.1	9e-17	AGAMOUS-like 33

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]