PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG013267.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

G2-like

Protein Properties

Length: 230aa MW: 26558.1 Da PI: 6.7933

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG013267.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	95.5	4.2e-30	18	71	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLHe+Fveave+LGG+ kAtP++il++m+vk L ++h+kSHLQ+YR+ CCG013267.1 18 PRLRWTPELHEHFVEAVERLGGKYKATPRRILQMMGVKELKIAHIKSHLQMYRS 71 9****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.3E-28	14	72	IPR009057	Homeodomain-like
PROSITE profile	PS51294	10.72	14	74	IPR017930	Myb domain
SuperFamily	SSF46689	1.36E-14	16	72	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.3E-23	18	73	IPR006447	Myb domain, plants
Pfam	PF00249	1.9E-9	19	70	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
MKTSRKNGVR QYNKSEHPRL RWTPELHEHF VEAVERLGGK YKATPRRILQ MMGVKELKIA 60 HIKSHLQMYR SRKGPKNINV LITMKKHLQA ERTQLDDMGI SSIFSSQRLL QGEHVMQMEC 120 EKSDSKHDIF SDESNGLQLT KEDGGDPEQQ DSAKTFVGRM SMEENIDRLP AETCELSLSF 180 TPSVSCCTAE ERELWPLINE QQREYNSTTS FISIPEFDYG SNHINLDLTI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-16	19	73	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-16	19	73	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-16	19	73	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-16	19	73	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-16	19	73	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-16	19	73	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-16	19	73	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-16	19	73	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011032774.1	1e-174	PREDICTED: uncharacterized protein LOC105131474
TrEMBL	A0A2K2BE09	1e-111	A0A2K2BE09_POPTR; Uncharacterized protein
STRING	POPTR_0002s05770.1	1e-112	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9186	28	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40260.1	8e-27	G2-like family protein