PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG013405.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 454aa    MW: 50482.2 Da    PI: 6.3271
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG013405.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM104.11.8e-32521941128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkk....leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra........tksgy 82 
                  lp G++F+P+d +l+ e+L++k++  +    + ++e+i+++d    i++++P +Lp  +k++ ++++fF++++++yatg+rk+r+         +s +
  CCG013405.1  52 LPIGVKFDPSDAQLL-EHLEAKCAVGNskphMFIDEFIPTLDsdkgICYTHPAKLP-GAKKDGNSVHFFHRTNNAYATGQRKRRKihcevgsnEDSVR 147
                  699************.99***9887765665334445666655566**********.55678899*******************85666666555899 PP

          NAM  83 WkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                  W++tgk+k+v++ +g ++g+kk++v+y  +++ +k+ k++Wvmh+y+l
  CCG013405.1 148 WHKTGKTKPVMD-NGVQKGCKKIMVLYksSKKGSKPDKSKWVMHQYHL 194
                  ************.999***********4434666778*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-3836213IPR003441NAC domain
PROSITE profilePS5100530.32752213IPR003441NAC domain
PfamPF023654.7E-1353194IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MARAWLIDGR SIARKVSRSS AYQIKDCGAI RECPKCHCHI DNSDVTQEWP GLPIGVKFDP  60
SDAQLLEHLE AKCAVGNSKP HMFIDEFIPT LDSDKGICYT HPAKLPGAKK DGNSVHFFHR  120
TNNAYATGQR KRRKIHCEVG SNEDSVRWHK TGKTKPVMDN GVQKGCKKIM VLYKSSKKGS  180
KPDKSKWVMH QYHLGTDEDE KEGEYLVSKI FYQQKQTEKN DDNQLIEDND ILSHQTSPRT  240
PNSNPPNPPR PAKSVMYDDI TNDNRTQLAV QNNEIKEEAP DVPAHVFQLE GDVEFPEWFA  300
GESQAVENSD FSALDDSLLC NEIFVSAPRV PNNSGVNRVS YTGMAHNTNE VNGNNNEPCG  360
IAELENLELD TPPDFQLAPL HPIKACAFPN KNHGSFKLSR SSEQGGSRAN VAHGSGLEAD  420
VAEINGDGDN NLKKVTGREE DGHQIRPPPP LLLF
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2149988e-63AC214998.1 Populus trichocarpa clone POP066-G22, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011003122.10.0PREDICTED: NAC domain-containing protein 8 isoform X2
TrEMBLA0A2K2C8450.0A0A2K2C845_POPTR; Uncharacterized protein
STRINGPOPTR_0001s35490.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75723047
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01600.14e-87NAC domain containing protein 44