PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG013445.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family LBD
Protein Properties Length: 192aa    MW: 21628.5 Da    PI: 7.2729
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG013445.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26026.22.3e-087505598
       DUF260 55 edamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98
                  ++++sl+yeA+a ++ PvyG++g + +lq+q+ ++++ l  +k
  CCG013445.1  7 VETLKSLFYEARASLEHPVYGSAGYVYSLQRQIVEVNELLFNAK 50
                 57899****************************99987666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031959.4E-6846IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MRTPRPVETL KSLFYEARAS LEHPVYGSAG YVYSLQRQIV EVNELLFNAK KELASYIGEE  60
HVGLPSCIPP IRLQKQLNPS SSFPSPPILK SAPHAAVKWD LSEIDFFTAA ATLHHQGIPT  120
VIPLRNNGPN PKLRQQKQQD FVGEADLTLD HELDKMDHSS SQIDQSPADH CLNINSNQRR  180
DSTKRKREDI LV
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2105130.0AC210513.1 Populus trichocarpa clone POP094-C01, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011039262.11e-105PREDICTED: LOB domain-containing protein 36-like
TrEMBLA0A2K1ZNX54e-83A0A2K1ZNX5_POPTR; Uncharacterized protein (Fragment)
STRINGPOPTR_0007s11450.13e-62(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2063223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66870.14e-11ASYMMETRIC LEAVES 2-like 1