PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG013446.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family LBD
Protein Properties Length: 182aa    MW: 20487.3 Da    PI: 7.8304
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG013446.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26025.92.7e-087455593
       DUF260 55 edamsslvyeAearardPvyGavgvilklqqqleqlkae 93
                  ++++sl+yeA+ar + PvyG++g + +lq+q+  +++ 
  CCG013446.1  7 VETLKSLFYEARARPEHPVYGSAGYVYSLQRQIFVVNEL 45
                 57899***************************9777655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031959.3E-6844IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MRTPRPVETL KSLFYEARAR PEHPVYGSAG YVYSLQRQIF VVNELLFNAK KELASYIGEE  60
HVGLPSCIPP IRLQKQLNPS SSFPSPPILK SAPHAAVKWD LSKIDRKEND FFTAAATLHH  120
QGIPAVIPLR NKGPTPDLRQ QKQQDFVGEA DLTLDHELDK MDHSSSQIDQ SPADHFLLVL  180
SR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2105130.0AC210513.1 Populus trichocarpa clone POP094-C01, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011039262.11e-133PREDICTED: LOB domain-containing protein 36-like
TrEMBLA0A2K1ZNX55e-86A0A2K1ZNX5_POPTR; Uncharacterized protein (Fragment)
STRINGPOPTR_0007s11450.12e-66(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2063223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66870.12e-10ASYMMETRIC LEAVES 2-like 1