PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG013474.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

Dof

Protein Properties

Length: 201aa MW: 21102.8 Da PI: 9.337

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG013474.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.4	7.4e-39	32	92	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++l+cprCdstntkfCyynny+ sqPr+fCk+CrryWt+GG+lr++PvGgg+rkn k+s CCG013474.1 32 EQEHLPCPRCDSTNTKFCYYNNYNFSQPRHFCKSCRRYWTHGGTLRDIPVGGGTRKNAKRS 92 68899****************************************************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-29	29	90	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.1E-33	34	90	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.255	36	90	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	38	74	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0000976	Molecular Function	transcription regulatory region sequence-specific DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence Send to blast
MPAELSSSEA ARRPQQSTAA TLTKPGGAPP QEQEHLPCPR CDSTNTKFCY YNNYNFSQPR 60 HFCKSCRRYW THGGTLRDIP VGGGTRKNAK RSRTSATSPA SFVGPITGTN IDGLPLPATP 120 VLLPLTSNQG LSVHFGGGDG KGNGGGLGGS FTSLLNTQGP AGFLALNGFG LGIGPGIEDV 180 NFALGRGLWP FPGMWEMLAL P

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00593	DAP	Transfer from AT5G66940	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC212845	0.0	AC212845.1 Populus trichocarpa clone POP021-P21, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011039246.1	1e-139	PREDICTED: LOW QUALITY PROTEIN: dof zinc finger protein DOF3.4
Swissprot	Q9FGD6	2e-52	DOF58_ARATH; Dof zinc finger protein DOF5.8
TrEMBL	B9HEE8	1e-122	B9HEE8_POPTR; Uncharacterized protein
STRING	POPTR_0007s11790.1	1e-123	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2801	31	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50410.1	2e-41	OBF binding protein 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]