PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG013481.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 182aa    MW: 21053.1 Da    PI: 9.564
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG013481.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.91.2e-1526111798
                  .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                   sd +k++ + + ++f+++hg++   sk  +++ +s  +W+v l   k+++++ ++kGW+ F     ++ gDf+vF+++g+s f  +v +++
  CCG013481.1  26 LSDIMKNQKIAILRRFFRKHGES--LSKSAVIKAPSAATWKVAL--LKHKDEVSFAKGWEMFIAYYSIDYGDFLVFEYEGNSLF--TVFIID 111
                  48999***************966..8999***************..*********************************99888..665555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.1E-1914113IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.0E-2114113IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.18220113IPR003340B3 DNA binding domain
CDDcd100171.50E-1220111No hitNo description
SMARTSM010193.4E-721113IPR003340B3 DNA binding domain
PfamPF023622.6E-1226111IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MASCSKRGNN GSLFTPKKTH FIRIILSDIM KNQKIAILRR FFRKHGESLS KSAVIKAPSA  60
ATWKVALLKH KDEVSFAKGW EMFIAYYSID YGDFLVFEYE GNSLFTVFII DKSFTEVGYQ  120
WNNTEAAESN QEDKLGDHED DDDDASVEFI DIRIMKMMPL LNSLTFRLAH KKQERRPKGR  180
KN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011039264.11e-106PREDICTED: B3 domain-containing transcription factor VRN1-like
TrEMBLA0A3N7FCF01e-83A0A3N7FCF0_POPTR; Uncharacterized protein
STRINGPOPTR_0007s11870.13e-84(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-17B3 family protein