PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG013710.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family CO-like
Protein Properties Length: 369aa    MW: 40658.3 Da    PI: 5.6611
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG013710.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.63.9e-061559240
     zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                 ++r+C+++     + +C+ ++ +lC+ C   eH        H++v
  CCG013710.1 15 RARVCDTCRAAACTVYCRADSAYLCAGCDAREHAAncvasrHERV 59
                 6899******99*********************667788888776 PP
2zf-B_box28.33.7e-0959104342
     zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                   r+C+ +e+ ++ l C+ +   lC  C   +H+       H++vp+
  CCG013710.1  59 VRVCEACERAPAALLCKADAASLCTACDADIHSAnplasrHQRVPI 104
                  689*****************************66999999**9997 PP
3CCT69.11.2e-23300343144
          CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                  Rea++lRY+eK+ktRkFeK+irY+sRKa+Ae+RpR+KGrF+k++
  CCG013710.1 300 REARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRK 343
                  9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011911.5191461IPR000315B-box-type zinc finger
SMARTSM003361.2E-71461IPR000315B-box-type zinc finger
CDDcd000218.88E-71761No hitNo description
PROSITE profilePS5011911.47657104IPR000315B-box-type zinc finger
PfamPF006433.0E-759104IPR000315B-box-type zinc finger
CDDcd000211.03E-860104No hitNo description
SMARTSM003366.7E-1062104IPR000315B-box-type zinc finger
PROSITE profilePS5101716.648300342IPR010402CCT domain
PfamPF062031.7E-17300342IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MLKQESSGSG GGDNRARVCD TCRAAACTVY CRADSAYLCA GCDAREHAAN CVASRHERVR  60
VCEACERAPA ALLCKADAAS LCTACDADIH SANPLASRHQ RVPILPISGC VHGSQVGPAA  120
GETEDLFTTQ EGEETISEEE EDEAASWLLL NPVKNGKNQN NNGFLFGGEV DEYLDLVEYN  180
SCTENQFSDQ YNQQHYSVPP KSYGGDRVVP IQYGEGKDHQ QQRQYHNFQL GLEYEPSKAA  240
YSYNGSISQS VSMSSMDVGV VPESTMSEIS ISQHIPPKGT IELVSGTAIQ MPSQLSPMDR  300
EARVLRYREK KKTRKFEKTI RYASRKAYAE TRPRIKGRFA KRKDVVVEDD QMFSSTLMAE  360
TGYGIVPSF
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Does not affect flowering time.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5151510.0AY515151.1 Populus deltoides CONSTANS-like protein CO2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011032791.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 2
SwissprotQ965021e-143COL2_ARATH; Zinc finger protein CONSTANS-LIKE 2
TrEMBLR4UBH10.0R4UBH1_POPTO; COL1-1
STRINGPOPTR_0004s10800.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38273352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15840.11e-101B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Simon S,Rühl M,de Montaigu A,Wötzel S,Coupland G
    Evolution of CONSTANS Regulation and Function after Gene Duplication Produced a Photoperiodic Flowering Switch in the Brassicaceae.
    Mol. Biol. Evol., 2015. 32(9): p. 2284-301
    [PMID:25972346]