PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG013920.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family RAV
Protein Properties Length: 369aa    MW: 42737.4 Da    PI: 8.8855
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG013920.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.31.2e-104490254
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54
                 ++kG+    k+g W A+I+       + +r++lg+f t++eAa a++ a+ kl+
  CCG013920.1 44 KFKGIV-PQKNGHWGAQIYS------NhQRIWLGTFKTEKEAAMAYDSAAIKLR 90
                 678886.455899****999......44**********99************98 PP
2B385.54.7e-27169265183
                  EEEE-..-HHHHTT-EE--HHH.HTT................---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh................ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                  f+k ltpsdv+k++rlv+pkkfa ++                 g+   +++l+++d+  +sW+++++y+++s+++v+tkGW++Fvk+++Lke+D+++F
  CCG013920.1 169 FQKDLTPSDVGKLNRLVIPKKFAVKYfpyifkdveddrvlntAGV--DDTELIFYDRFMKSWKFRYCYWRSSQSFVFTKGWNRFVKEKKLKEKDIIIF 264
                  89*****************************98888887765333..6789*********************************************** PP

                  E CS
           B3  83 k 83 
                  +
  CCG013920.1 265 Y 265
                  9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.65E-2443101No hitNo description
SuperFamilySSF541712.62E-1544101IPR016177DNA-binding domain
PROSITE profilePS5103217.4384499IPR001471AP2/ERF domain
PfamPF008472.1E-64490IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-174499IPR001471AP2/ERF domain
SMARTSM003801.0E-2144105IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.103.0E-32164268IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.72E-26167267IPR015300DNA-binding pseudobarrel domain
CDDcd100173.73E-23168265No hitNo description
SMARTSM010191.4E-17169279IPR003340B3 DNA binding domain
PROSITE profilePS5086311.533169290IPR003340B3 DNA binding domain
PfamPF023623.1E-24169265IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MEDQDASSSM ISSAKSPIIN VETLAFSTSN KLGRLHSNIG NVAKFKGIVP QKNGHWGAQI  60
YSNHQRIWLG TFKTEKEAAM AYDSAAIKLR STDSHRNFPW NDRNVQEPSF QNQYSTEEIL  120
NMIRDGSYQQ IFVDFIMKQS QREEIGGSDD PNGRRVHADD EQLSCTQLFQ KDLTPSDVGK  180
LNRLVIPKKF AVKYFPYIFK DVEDDRVLNT AGVDDTELIF YDRFMKSWKF RYCYWRSSQS  240
FVFTKGWNRF VKEKKLKEKD IIIFYTCACP NKVQEQHGQG QYFSMIDVVY CNGQSGKVDG  300
FNQTEDVQRE LAVVLRQNMR KKLQKDGKEL KEEKEILKNK VKQKGFRLFG VQINEVELQL  360
QPCSQTGAE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-2516826413100DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011015305.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g50680-like
SwissprotQ9C6P51e-113RAVL2_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g50680
TrEMBLB9GYV20.0B9GYV2_POPTR; Uncharacterized protein
STRINGPOPTR_0003s21810.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50003156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.11e-108RAV family protein