PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG014036.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

FAR1

Protein Properties

Length: 313aa MW: 36010.9 Da PI: 7.2339

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG014036.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	90.2	2.7e-28	98	185	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA+++GF +r+sk ++s+r+g+ + r +vC+keg+r ++k++ k r+raetr+gC+a++ v+k ++gkw+vtk+++eH+H+l+p CCG014036.1 98 FYNAYATRIGFIIRVSKLSRSRRDGSAIGRALVCNKEGFRMPDKRE--KIVRQRAETRVGCRAMILVRKVSSGKWVVTKFVKEHTHSLTP 185 ****************************************9988..9************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.4E-25	98	185	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence Send to blast
MKVIEIVDVV FAVDFIVDND ANGDIAGNVA VDIARARDEN EVVENSVEGE FEQYDHKMDK 60 ESLAIDMIPD AVPAMSMVAA DEPYIGQEFD SEASAHAFYN AYATRIGFII RVSKLSRSRR 120 DGSAIGRALV CNKEGFRMPD KREKIVRQRA ETRVGCRAMI LVRKVSSGKW VVTKFVKEHT 180 HSLTPGKARR DCIYDQYPNE HDKIRELSQQ LAMEKKRAAT YKRHLELIFE QIEEHNESLS 240 KKIQHIVHSN EHDKIRELSQ QLAMEKKRAA TYKRHLELIF EQIEEHNESL SKKIQHIVHS 300 VRGMENKPQQ SQT

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC214628	0.0	AC214628.1 Populus trichocarpa clone POP040-F15, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011003411.1	0.0	PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3-like
TrEMBL	A0A2K1R5Z1	1e-173	A0A2K1R5Z1_POPTR; Uncharacterized protein
STRING	POPTR_0017s05780.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2453	30	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	1e-111	FAR1 family protein