PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG014198.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 93aa    MW: 10588 Da    PI: 7.2881
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG014198.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.22.4e-123560227
                 -S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                 +++ C+++ rtG C++G++C+F+H+p
  CCG014198.1 35 GEPDCSYYIRTGLCRFGATCRFNHPP 60
                 6899********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.233361IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-53360IPR000571Zinc finger, CCCH-type
PfamPF006427.9E-93560IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-63861IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.6E-53959IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 93 aa     Download sequence    Send to blast
MFELSHPVSF SDAMWQMNLR SSETMEAGPY PERSGEPDCS YYIRTGLCRF GATCRFNHPP  60
NRKLAIAAAR MKGEFPERIG QPECQVYSVS TVY
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2164704e-64AC216470.1 Populus trichocarpa clone POP037-N11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011014133.14e-48PREDICTED: zinc finger CCCH domain-containing protein ZFN-like
RefseqXP_011015733.16e-49PREDICTED: zinc finger CCCH domain-containing protein 33-like isoform X1
RefseqXP_011015734.13e-49PREDICTED: zinc finger CCCH domain-containing protein 33-like isoform X2
RefseqXP_024439444.14e-48zinc finger CCCH domain-containing protein ZFN-like isoform X4
SwissprotQ9SWF92e-45ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A2K1Y3466e-46A0A2K1Y346_POPTR; Uncharacterized protein
TrEMBLA0A3N7FZN19e-48A0A3N7FZN1_POPTR; Uncharacterized protein
TrEMBLA0A3N7GS959e-47A0A3N7GS95_POPTR; Uncharacterized protein
STRINGPOPTR_0013s08490.12e-48(Populus trichocarpa)
STRINGPOPTR_0019s08040.12e-49(Populus trichocarpa)
STRINGXP_008355849.11e-46(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2245144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-42zinc finger protein 1