PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG014272.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 314aa    MW: 35395.1 Da    PI: 9.7974
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG014272.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.91.6e-31244302360
                  -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS
         WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60 
                  D + WrKYGqK++kgs++prsYY+C+s+ gCp++k+vers edp+++++tYegeHnh+k
  CCG014272.1 244 DDHYWRKYGQKPIKGSPYPRSYYKCSSTrGCPARKHVERSLEDPTMLVVTYEGEHNHSK 302
                  8899**********************999****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105332.3E-13204240IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.803.1E-32231302IPR003657WRKY domain
PROSITE profilePS5081130.377237303IPR003657WRKY domain
SuperFamilySSF1182907.32E-27239301IPR003657WRKY domain
SMARTSM007744.8E-37242302IPR003657WRKY domain
PfamPF031069.0E-27244300IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MKEASGVCVS MRPRQDFRVL QVAQSSFRQA HHLFSCISDQ NQKRSIQEVS LIAQDTVNEF  60
RNLVRLLDVS EQSGCKRIRK GPLPHSHDIN PVELMDSPNS VSRSPDHNFS QPNRQLFPIQ  120
SIQSTTSLIH ANSIDLYREK QKTKDNVDVK TNLILGFNLS LLQPSTSFSS LDGGGRIIHH  180
STSEILPSQD DASIFSESKS GVKSEEKCLA STGGCHCSKR RKLRIKKVIK VPASRTKPAD  240
IPPDDHYWRK YGQKPIKGSP YPRSYYKCSS TRGCPARKHV ERSLEDPTML VVTYEGEHNH  300
SKIQSPNPDI MLHI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-212363001174Probable WRKY transcription factor 4
2lex_A4e-212363001174Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3774420.0GQ377442.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor 22 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011018279.10.0PREDICTED: probable WRKY transcription factor 17 isoform X1
RefseqXP_011018280.10.0PREDICTED: probable WRKY transcription factor 17 isoform X2
TrEMBLA0A3Q9EDY60.0A0A3Q9EDY6_POPTO; WRKY DNA-binding protein 11
STRINGPOPTR_0001s00350.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF144241318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31550.15e-41WRKY DNA-binding protein 11