PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG014432.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 336aa    MW: 37799.1 Da    PI: 6.6361
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG014432.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.81.4e-191461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEde+lvd++k+ G ++Wk+ ++  g++R++k+c++rw +yl
      CCG014432.1 14 KGPWTPEEDEKLVDYIKRNGHENWKALPKLAGLNRCGKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding538.2e-1767111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++++eE+  +v+++  lG++ W++Ia++++ gRt++++k++w+++
      CCG014432.1  67 RGKFSEEEERVIVNLHSVLGNK-WSRIASHLP-GRTDNEIKNFWNTH 111
                      89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.679961IPR017930Myb domain
SuperFamilySSF466899.17E-3112108IPR009057Homeodomain-like
SMARTSM007172.8E-151363IPR001005SANT/Myb domain
PfamPF002492.9E-171461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-241568IPR009057Homeodomain-like
CDDcd001676.54E-121661No hitNo description
PROSITE profilePS5129427.13962116IPR017930Myb domain
SMARTSM007178.3E-1666114IPR001005SANT/Myb domain
PfamPF002495.7E-1567111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-2669116IPR009057Homeodomain-like
CDDcd001671.22E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MVRSPRSHGS DFKKGPWTPE EDEKLVDYIK RNGHENWKAL PKLAGLNRCG KSCRLRWTNY  60
LRPDIKRGKF SEEEERVIVN LHSVLGNKWS RIASHLPGRT DNEIKNFWNT HIRKKLLQMG  120
IDPNTHKPRT DLDHFLNLSQ FLGAAQFGNT ADPLDNFLQL QADATQLANI QLLRNLLQIM  180
NTNTLTNLEN NNLLGSQNPN LFEGLGNWAT ISNTKEPFNP VSQDLFNPLA TPQAPPNDFQ  240
AISNLWASYE GGFGPEGLNI NNNSLSSSYG TQTDQNPLPA LVSASTSPGT SIVNQKESKG  300
NPSNYSTGTP TYTVFEGWEK LIDDDNYSSY WKDILE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-31111164108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011018534.10.0PREDICTED: transcription factor MYB39-like
TrEMBLB9MU450.0B9MU45_POPTR; Uncharacterized protein
STRINGPOPTR_0001s02240.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40234172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.26e-84myb domain protein 9